Let KAYAK do the searching
Based on KAYAK hotel searches, the most popular destination is Sapporo (62% of total searches to Hokkaido Prefecture). The next most popular destinations are Niseko (22%) and Hakodate (9%). Searches for hotels in Otaru (6%) are also popular.
KAYAK users have found double rooms in Hokkaido Prefecture for as cheap as $16 (Hakodate) in the last 3 days. The average price is $186.
In the last 72 hours, users have found Hokkaido Prefecture hotels for tonight for as low as $47 (Noboribetsu). Users have also found 3-star hotels from $85 (Biei) and 4-star+ hotels from $168 (Noboribetsu).