$106 Find Cheap Flights from Houston to Puerto Rico

This is the cheapest one-way flight price found by a KAYAK user in the last 72 hours by searching for a flight from Houston to Puerto Rico departing on 6/2. Fares are subject to change and may not be available on all flights or dates of travel. Click the price to replicate the search for this deal.
1 adult
1 adult, Economy, 0 bags

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Cheap Flights from Houston to Puerto Rico

Cheapest round-trip prices found by our users on KAYAK in the last 72 hours
Aguadilla
Aguadilla1 stop$276
Ponce
Ponce1 stop$212
Culebra
Culebra2 stops$1,146
Aguadilla
Aguadilla1 stop$276
Ponce
Ponce1 stop$212
Culebra
Culebra2 stops$1,146

Book Cheap Houston to Puerto Rico Plane Tickets

 
Here are some of the best deals found on KAYAK recently from the most popular airlines for round-trip flights from Houston to Puerto Rico that are departing in the next months. While these flights were available on KAYAK in the last 72 hours, prices and availability are subject to change and deals may expire.
Discover the best prices for you by selecting your travel dates on KAYAK.

Recent round-trip flight deals from Houston to Puerto Rico

Sat, Jun 6 - Tue, Jun 16
Frontier Logo
11:51 am - 4:01 am
IAH
-
SJU
15h 10m
1 stop
Frontier Logo
8:00 am - 12:12 pm
SJU
-
IAH
29h 12m
1 stop
$229Frontier
Wed, Jul 29 - Wed, Aug 5
Frontier Logo
8:49 am - 5:34 pm
IAH
-
SJU
7h 45m
1 stop
Frontier Logo
6:00 am - 2:50 pm
SJU
-
IAH
9h 50m
1 stop
$233Frontier
Mon, Oct 12 - Sat, Oct 17
Frontier Logo
12:21 pm - 8:44 pm
IAH
-
SJU
7h 23m
1 stop
Frontier Logo
2:58 am - 10:24 am
SJU
-
IAH
8h 26m
1 stop
$235Frontier
Tue, Jul 7 - Tue, Jul 14
Frontier Logo
8:37 pm - 12:28 am
IAH
-
SJU
26h 51m
1 stop
Frontier Logo
7:30 am - 7:54 am
SJU
-
IAH
25h 24m
1 stop
$236Frontier
Mon, Jun 8 - Tue, Jun 16
Frontier Logo
10:51 am - 11:59 pm
IAH
-
SJU
12h 08m
1 stop
Frontier Logo
8:00 am - 12:12 pm
SJU
-
IAH
29h 12m
1 stop
$237Frontier
Thu, Aug 27 - Sat, Aug 29
Multiple Airlines Logo
7:24 am - 12:33 am
IAH
-
BQN
16h 09m
1 stop
Multiple Airlines Logo
2:59 am - 8:47 am
BQN
-
IAH
6h 48m
1 stop
$345Multiple Airlines
Wed, May 20 - Tue, May 26
United Airlines Logo
9:30 am - 4:13 pm
IAH
-
CPX
29h 43m
2 stops
United Airlines Logo
10:30 am - 10:38 pm
CPX
-
IAH
13h 08m
2 stops
$1,146United Airlines
Sat, May 16 - Wed, May 20
United Airlines Logo
10:03 am - 4:13 pm
IAH
-
CPX
29h 10m
1 stop
United Airlines Logo
10:30 am - 6:51 pm
CPX
-
IAH
9h 21m
1 stop
$1,167United Airlines
Sat, May 16 - Wed, May 20
United Airlines Logo
6:18 pm - 4:13 pm
IAH
-
CPX
20h 55m
2 stops
United Airlines Logo
10:30 am - 11:42 pm
CPX
-
IAH
14h 12m
2 stops
$1,171United Airlines
Wed, May 20 - Tue, May 26
United Airlines Logo
3:03 pm - 4:13 pm
IAH
-
CPX
24h 10m
1 stop
United Airlines Logo
10:30 am - 6:01 am
CPX
-
IAH
20h 31m
1 stop
$1,292United Airlines
Booking Insights

KAYAK's insights & trends for Houston to Puerto Rico flights

Get data-powered insights and trends into flights from Houston to Puerto Rico to help you find the cheapest flights, the best time to fly and much more.

What is the cheapest Houston George Bush Intcntl Airport to Puerto Rico flight route?

Data is based on round-trip flight searches on KAYAK over the past month.

The cheapest ticket to Puerto Rico from Houston George Bush Intcntl Airport found in the last 72 hours was to San Juan, at $399 round-trip. The most popular route is from Houston George Bush Intcntl Airport (IAH) to San Juan Luis Munoz Marin Intl Airport (SJU), and the cheapest round-trip airline ticket found on this route in the last 72 hours was $399.

What is the cheapest time of day to fly to Puerto Rico?

The average price for all round-trip flights from Houston George Bush Intcntl Airport to Puerto Rico depending on the time of departure, clicked by users on KAYAK in the last 2 weeks.

The cheapest time of day to fly to Puerto Rico is generally in the afternoon, when round-trip flights cost $366 on average. Morning departures are around 14% more expensive than evening flights, on average. The most expensive time of day to fly to Puerto Rico is generally at night, which is peak travel time and where the average cost of a ticket is $536.

Can I save money by flying with a layover from Houston George Bush Intcntl Airport to Puerto Rico?

The average round-trip price for all non-stop flights, flights with one layover, and flights with two layovers for the route found by users searching on KAYAK in the last 2 weeks.

No, with an average price for the route of $397, prices are generally cheapest when you fly direct.

What is the cheapest month to fly from Houston George Bush Intcntl Airport to Puerto Rico?

To calculate monthly average prices, KAYAK takes all prices for each month over the last year for round-trip flights from Houston George Bush Intcntl Airport to Puerto Rico, removes the top 0.1% to account for outliers, and then takes the median of all values for each month.

The cheapest month for flights from Houston George Bush Intcntl Airport to Puerto Rico is May, when tickets cost $69 (return) on average. On the other hand, the most expensive months are August and December, when the average cost of round-trip tickets is $131 and $129 respectively.

What’s the cheapest day of the week to fly from Houston to Puerto Rico?

The average price of all round-trip flights from Houston George Bush Intcntl Airport to Puerto Rico clicked on KAYAK for each day over the last 12 months.

When flying from Houston to Puerto Rico, you should consider leaving on a Tuesday and avoid Fridays if you are looking for the best rates. For your return to Houston, you’ll find the best rates on Thursdays and the most expensive ones on Mondays.

How far in advance should I book a flight from Houston George Bush Intcntl Airport to Puerto Rico?

To calculate weekly average prices, KAYAK takes all prices for each week before departure over the last year for round-trip flights from Houston George Bush Intcntl Airport to Puerto Rico, removes the top 0.1% to account for outliers, and then takes the average of all the values for each week.

To get a below average price on the flight from Houston George Bush Intcntl Airport to Puerto Rico, you should book around 2 weeks before departure, which saves you about 25% compared to booking last minute. For the absolute cheapest price, our data suggests you should book 5 weeks before departure.

Good to know

Low seasonSeptember
Cheapest flight$106
Best time to beat the crowds with an average 26% drop in price.
Most popular time to fly and prices are also 12% lower on average.
Flight from Houston George Bush Airport to Aguadilla

FAQs - booking Puerto Rico flights

  • Which airlines fly nonstop to Puerto Rico from Houston?

    You can book nonstop flights to Puerto Rico from Houston with only one airline, United Airlines. Other airlines, such as Frontier Airlines and Spirit Airlines, offer one-stop flights to Puerto Rico with a layover at Orlando (MCO), Philadelphia (PHL), or Tampa (TPA). United Airlines offers several daily direct flights from IAH to SJU. Flights to other airports in Puerto Rico include at least one stopover en route and take about 4h15min.

  • How do I get to George Bush Intercontinental Airport for my flight to Puerto Rico?

    You can use public transport to get to the airport from the city center without worrying about parking and traffic. The Metro bus is a popular means to the airport from the city center because it is affordable. BUSH IAH Express 102, which runs every 15 to 30 minutes, is a direct bus that takes you straight to Terminal C of IAH in about an hour. You can also use a taxi or rideshare like Uber, which is much faster.

  • What can I do during a layover at San Juan Airport?

    Thanks to the handful of amenities at the airport, you’ll find plenty to keep you busy at SJU. Take a breather while enjoying snacks and drinks at the lounges in Terminals A and C. Terminals C and D also have chapels where you can pray. The airport has more than 30 restaurants where you can enjoy a meal during your layover. Duty-free stores and souvenir kiosks are also available if you want to do some shopping.

  • Is there public transportation from San Juan Airport to the city center?

    Yes, public transport is available from San Juan Airport to the city center. San Juan city center is about 13 miles away, and the bus is the only reliable public transportation. Buses D53 and T5 run approximately every 30 minutes every day of the week. They take you from either Terminal A or B of the airport to the Terminal Covadonga in the city center. A one-way bus ticket from the airport to the city center will cost you about $0.75, making the bus the most affordable method of transportation. Large luggage is not allowed onboard these buses.

  • How does KAYAK find such low prices on flights from Houston to Puerto Rico?

    KAYAK is a travel search engine. That means we look across the web to find the best prices we can find for our users. With over 2 billion flight queries processed yearly, we are able to display a variety of prices and options on flights from Houston to Puerto Rico.

  • How does KAYAK's flight Price Forecast tool help me choose the right time to buy my flight ticket from Houston to Puerto Rico?

    KAYAK’s flight Price Forecast tool uses historical data to determine whether the price for a flight from Houston to Puerto Rico is likely to change within 7 days, so travelers know whether to wait or book now.

  • What is the Hacker Fare option on flights from Houston to Puerto Rico?

    Hacker Fares allow you to combine one-way tickets in order to save you money over a traditional round-trip ticket. You could then fly from Houston to Puerto Rico with an airline and back with another airline.

  • What is KAYAK's "flexible dates" feature and why should I care when looking for a flight from Houston to Puerto Rico?

    Sometimes travel dates aren't set in stone. If your preferred travel dates have some wiggle room, flexible dates will show you all the options when flying from Houston to Puerto Rico up to 3 days before/after your preferred dates. You can then pick the flights that suit you best.

Top tips for finding cheap flights to Puerto Rico

  • George Bush Intercontinental Airport (IAH) serves flights to Puerto Rico from Houston. Terminal C handles direct and non-direct airlines flying to Puerto Rico from IAH.
  • If you’re not a fan of eating during a flight, IAH terminals have a variety of fast food and restaurant options where you can eat before you board your flight.
  • San Juan Airport (SJU) in Puerto Rico serves cities like San Juan, Toa Baja, Vega Alta and Trujillo Alto. Meanwhile, cities like Aguadilla, Aguada, Moca, Isabela, and Rincon are served by Aguadilla Airport (BQN).
  • Travelers should be aware that they will undergo a biometric facial comparison process when they arrive in Puerto Rico. The law requires all airports in Puerto Rico to verify the identity of every traveler.
  • US citizens only need to present valid ID to enter Puerto Rico. A passport or visa is not necessary because Puerto Rico is a territory of the US.

Reviews of the top 5 airlines serving from Houston to Puerto Rico

 
Need help choosing which airline to fly with from Houston to Puerto Rico? KAYAK airline reviews give an overall score for each airline based on loads of factors, including comfort, boarding, in-flight entertainment and more, to make your decision easier. See airline scores according to verified KAYAK customer reviews.
7.9
DeltaOverall score based on 8458 reviews
8.5Crew
8.1Boarding
7.2Food
7.8Entertainment
7.9Comfort
Airline reviews

Much better than Latam, the worse airline company ever. I hope I don't have the need to fly Latam ever in my life again.

10.0 ExcellentIrmara, May 2026
MCO - BOS
Read more Delta reviews

Much better than Latam, the worse airline company ever. I hope I don't have the need to fly Latam ever in my life again.

Seats in Delta Main are unbelievably close to the seat in front of. Hard to get a backpack under the seat.

The flight was operated by Latam. The aircraft had a technical issue and the flight was delayed for the next day. They grounded other passengers to get their airplane assigned to my flight. Most of he ground staff don't speak English (Orlando Airport), but were very polite.The crew on the other hand could speak English and Portuguese. On board service was good.

The agent at check in and at the gate were less than thrilled to be at work. I'm not a fan of Kayak's placement on the plane. I got put in the middle seat and none of my preferences were used.

In ATL they have two sets of departure screens. Follow what is on your airline's departure board - the ATL Airport Authority departure board had completely incorrect details about the gate assignment for my flight, which would have made me miss boarding.

Flight was delayed it was hot while sitting on the plane, one engine was working on the plane until they had to do some jimmy rigging down the runway in order for the other engine to charge up. It was ridiculous

The flight was very good and the staff was very friendly and helpful!

The only thing I would say is we tried to get on a standby earlier flight, but with our fair we couldn’t. That seems senseless to leave with open seats..

Very easy to use and convenient, you can perform any action within the same portal

In a world of delays, Delta was on time both ways! Boarding was fast and efficient. Staff was friendly. AND wifi worked.

It's a long flight and I would have liked better snacks between lunch and the arrival meal. It's fine to have fruit and nuts but I really don't like ramen because it's salty junk soup. I'd suggest sandwiches. They're not expensive nor are they hard to store for a long flight. The FA's had a couple of big services and they were super busy preparing, executing and then cleaning up. Then they disappeared.

Great flight. Got to watch a movie. Smooth flight and early arrival at ORD.

I've been flying American mostly, and it's been very frustrating. This united flight makes me realize maybe the issue isn't flying, but the airline. United was a significantly better experience. The plane was more comfortable, with a normal amount of leg room (vs the ridiculous reductions AA has made), more comfortable seats, screens to watch movies. It was a much better experience!

We had excellent customer service despite the chaos at George Bush airport in Houston!

It isvvery small flight. No leg room . No space to put my personal item at feet.

Didn't make the flight because the first leg of my flight was canceled and the next leg was already booked.

Terrible because it was cancelled due to volcanic ash clouds in Guatemala while all other airlines kept flying. Had to pay for a hotel to stay overnight in Houston and try to fly next day.

Overall we had a good experience during our flight from San Francisco to Houston.

Airport terminal was outdated, flight was on a small jet with no wifi

The crew made our experience extremely bad. They were rude and didn’t have anything for kids.

Cancelled BOYH legs of our flight home 30 min before initial boarding

The flight was delayed about an hour for a maintenance specialist to approve the maintenance repair

This flight was delayed but it worked in my favor because my Atlanta to Dallas flight was delayed.

The staff was nice. I appreciated that I was able to take an earlier flight, even though it was last minute. The boarding process felt rather chaotic.

My flight got delayed a total of five times. And the boarding gate changed four times. most of the time the platform was not up-to-date with the changes taking place. The most discouraging part of the entire trip by far.

Returned home with a blood clot from flight homes and the uncomfortable aircraft I was on.

The crew was very kind, but no in-flight entertainment monitors and a 2 hour and 30 minute delay was extremely frustrating.

Everything was delayed and the staff sent me to the wrong gate, causing me to miss one of my flights. I arrived at my destination 6 hours later than I was supposed to.

It was good, the staff was great, and the food, was as usual, tea and biscuit. Bathroom was clean, and the plane was clean as well.

It was really a terrific experience both going and returning on AA. Staff and crew were professional.

Shut down without prior notice End up with spending lots of extra $$$

The company went out of business and now I'm stuck in Ft. Lauderdale. Would not recommend.

The repeated flight delays—this time nearly three hours without any weather-related cause—are unacceptable. Yet, passengers are penalized heavily even for being a minute late. It is unreasonable that there is no compensation for such significant delays, nor even basic provisions like water during the wait or in flight. This imbalance in accountability is deeply frustrating and needs to be addressed.

They didn’t put my luggage on my transfer so I had to spend the night in Detroit. They said my luggage would be here in the morning and they’re still searching for it. It did not arrive apparently.

Great just wish they always had WiFi on every flight couldn’t even purchase it

They keep delaying and cancel at last moment and height was for you to get refund need to be in chat line for two hours. I complained to DOT. Never recommend this airline on Kayak please

We had to take a bus to the plane with a old woman and carry on bags, and at landing at the airport we have to wait one hour seating on the plane waiting for a gate. We came back from Australia Bussines class Quantas 16 hours traveling, then wait in Dallas 7 hours for connection...honestly waiting 1 hour more at the plane was the worst part.

Flight delayed twice (not Spirit fault) No food served* No entertainment * *in response to my choices in the rating. None was provided so couldn’t rate properly

The flight was a big joke very uncomfortable I had a horrible experience and I will never fly with them again everything about the flight was bogus and I’m not happy with it at all this experience makes me not want to fly ever again

Pricing, boarding time communication, over priced baggage and overall service is lacking, seating unconfortable

Frontier scheduled a 40 minute connection in DEN. What they failed to mention was that they “close the doors” 20 mins prior to departure, which means you only have 20 mins. Not enough time. Possibly against DOT regulations. Filing complaint.

Flight was scheduled at 9:40pm. Got delayed to 10 am, the next day. crazy

The bag check, flight check-in, and onboard experience convinced my wife and me that we will actively go out of our way to avoid flying Frontier Airlines in the future. At bag check, we were informed that check-in could only be completed via the Frontier mobile app. Unfortunately, the app was extremely frustrating—sending us through repetitive, confusing loops that repeatedly forced us to decline add-on services with nearly every click. While most airline apps upsell, this one felt intentionally exhausting. As the process dragged on, we became genuinely concerned that my phone battery would die before check-in could be completed. We approached the bag check staff—who were standing together talking—and explained both our frustration and our predicament. They laughed. Later, my wife described the interaction as “gaslighting,” which felt accurate. We were then informed it would cost $25 per person simply to have our boarding passes printed. From that point forward, the tone of the experience was consistently hostile. The bag check employees were condescending and combative, behaving more like bullies than customer service staff. Unfortunately, that same attitude continued onboard. One flight attendant argued with me when I attempted to stow my backpack in the overhead bin. I explained that we had each paid $75 to check our bags specifically so we would not need to use carry-on space and could have adequate legroom. She demanded to see my ticket, pointed out that it said “no carry-on”—which I acknowledged—and I reiterated that this was precisely why we paid to check our bags. Her response was, “I don’t make the rules.” She then walked away, but not before asking if I “truly wanted to fly back to Chicago today?”—an unnecessary and unmistakable threat. It is also worth noting that despite booking our tickets together in the same transaction, we were not seated together. Upon our return to Chicago—where we could once again sit together—we compared onboard experiences. We both remarked on how unhappy the flight attendants appeared and how each of us was separately asked whether we would like to purchase a beverage. We declined. At no point was water mentioned as an option, leaving us with the clear impression that even water came at a cost—or that complimentary water, if available at all, was deliberately left unmentioned. Overall, the experience was shocking and deeply disappointing, but it was also a profound learning experience—one we will not forget and will not repeat. -Steve

Plane was hot and miserable and the crew was rude!

12 hour delay required getting on and off plane 3 times - would have at least liked to have been offered a snack or drink

They didn’t offer a water, even after I asked

They switched our terminal 3 times and we were delayed for four plus hours!!!

It was an early flight and most people napped/slept and the crew let us which was nice.

The crew acted like they had never done this and kept barking passive aggressive orders at people. + the security line + the delay + sitting on the tarmac for 2 hours + none of the apps or signage updating with correct times

More inflight connection. And leg space is horrible. And the paying for baggage I'd ridiculous!!!

Everything you need to know for your flight from Houston to Puerto Rico

Information on your arrival and departure airports