MSO

$96 Find Cheap Flights from San Francisco Bay Area to Missoula - Compare and Save

This is the cheapest one-way flight price found by a KAYAK user in the last 72 hours by searching for a flight to Missoula departing on 9/9. Fares are subject to change and may not be available on all flights or dates of travel. Click the price to replicate the search for this deal.
1 adult
1 adult, Economy, 0 bags

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Cheap Flights from San Francisco Bay Area to Missoula

 
Here are some of the best deals found on KAYAK recently from the most popular airlines for round-trip flights from San Francisco Bay Area to Missoula that are departing in the next months. While these flights were available on KAYAK in the last 72 hours, prices and availability are subject to change and deals may expire.
Discover the best prices for you by selecting your travel dates on KAYAK.

Recent round-trip flight deals from San Francisco Bay Area to Missoula

Wed, Sep 9 - Sun, Sep 13
Multiple Airlines Logo
7:11 pm - 8:59 pmSFO  San Francisco-MSO Missoula Johnson-Bell Field
24h 48m1 stop Las Vegas Harry Reid Intl
Multiple Airlines Logo
9:49 pm - 8:14 amMSO  Missoula Johnson-Bell Field-SFO San Francisco
11h 25m1 stop Las Vegas Harry Reid Intl
$191Multiple Airlines
Thu, Sep 10 - Sun, Sep 13
Multiple Airlines Logo
10:17 am - 8:59 pmOAK  Oakland-MSO Missoula Johnson-Bell Field
9h 42m1 stop Las Vegas Harry Reid Intl
Multiple Airlines Logo
9:49 pm - 9:22 amMSO  Missoula Johnson-Bell Field-OAK Oakland
12h 33m1 stop Las Vegas Harry Reid Intl
$214Multiple Airlines
Wed, Sep 23 - Sun, Sep 27
Multiple Airlines Logo
3:15 pm - 8:59 pmSFO  San Francisco-MSO Missoula Johnson-Bell Field
28h 44m1 stop Las Vegas Harry Reid Intl
Multiple Airlines Logo
9:49 pm - 10:55 amMSO  Missoula Johnson-Bell Field-SFO San Francisco
14h 06m1 stop Las Vegas Harry Reid Intl
$223Multiple Airlines
Sat, Sep 19 - Sat, Sep 26
United Airlines Logo
12:00 pm - 3:24 pmSFO  San Francisco-MSO Missoula Johnson-Bell Field
2h 24mnonstop
United Airlines Logo
4:15 pm - 5:50 pmMSO  Missoula Johnson-Bell Field-SFO San Francisco
2h 35mnonstop
$279United Airlines
Sat, Sep 19 - Sat, Sep 26
United Airlines Logo
1:56 pm - 10:30 pmSFO  San Francisco-MSO Missoula Johnson-Bell Field
7h 34m1 stop Los Angeles
United Airlines Logo
4:15 pm - 5:50 pmMSO  Missoula Johnson-Bell Field-SFO San Francisco
2h 35mnonstop
$289United Airlines
Mon, Sep 28 - Thu, Oct 1
Alaska Airlines Logo
7:00 am - 3:17 pmSFO  San Francisco-MSO Missoula Johnson-Bell Field
7h 17m1 stop Seattle/Tacoma Intl
Alaska Airlines Logo
4:16 pm - 10:45 pmMSO  Missoula Johnson-Bell Field-SFO San Francisco
7h 29m1 stop Seattle/Tacoma Intl
$299Alaska Airlines
Sat, Sep 19 - Tue, Sep 22
Alaska Airlines Logo
4:51 pm - 11:01 pmSFO  San Francisco-MSO Missoula Johnson-Bell Field
5h 10m1 stop Seattle/Tacoma Intl
Alaska Airlines Logo
4:16 pm - 10:59 pmMSO  Missoula Johnson-Bell Field-SFO San Francisco
7h 43m1 stop Seattle/Tacoma Intl
$299Alaska Airlines
Tue, Sep 8 - Wed, Sep 16
Delta Logo
5:19 pm - 12:18 amSFO  San Francisco-MSO Missoula Johnson-Bell Field
5h 59m1 stop Salt Lake City
Delta Logo
5:30 am - 9:00 amMSO  Missoula Johnson-Bell Field-SFO San Francisco
4h 30m1 stop Salt Lake City
$299Delta
Fri, Nov 13 - Sun, Nov 15
Delta Logo
7:21 pm - 12:30 amSFO  San Francisco-MSO Missoula Johnson-Bell Field
4h 09m1 stop Salt Lake City
Delta Logo
5:33 am - 9:05 amMSO  Missoula Johnson-Bell Field-SFO San Francisco
4h 32m1 stop Salt Lake City
$299Delta
Sat, Sep 19 - Tue, Sep 22
United Airlines Logo
12:00 pm - 3:24 pmSFO  San Francisco-MSO Missoula Johnson-Bell Field
2h 24mnonstop
United Airlines Logo
7:00 am - 11:13 amMSO  Missoula Johnson-Bell Field-SFO San Francisco
5h 13m1 stop Los Angeles
$303United Airlines
Useful Info

Good to know

Low season

January

Cheapest flight

$96
Best time to beat the crowds with an average 8% drop in price.
Most popular time to fly with an average 16% increase in price.
Flight from San Francisco to Missoula

FAQs for booking flights from San Francisco Bay Area to Missoula

  • How does KAYAK find such low prices on flights from San Francisco Bay Area to Missoula?

    KAYAK is a travel search engine. That means we look across the web to find the best prices we can find for our users. With over 2 billion flight queries processed yearly, we are able to display a variety of prices and options on flights from San Francisco Bay Area to Missoula.

  • How does KAYAK's flight Price Forecast tool help me choose the right time to buy my flight ticket from San Francisco Bay Area to Missoula?

    KAYAK’s flight Price Forecast tool uses historical data to determine whether the price for a flight to Missoula from San Francisco Bay Area is likely to change within 7 days, so travelers know whether to wait or book now.

  • What is the Hacker Fare option on flights from San Francisco Bay Area to Missoula?

    Hacker Fares allow you to combine one-way tickets in order to save you money over a traditional round-trip ticket. You could then fly to Missoula with an airline and back to San Francisco Bay Area with another airline.

  • What is KAYAK's "flexible dates" feature and why should I care when looking for a flight from San Francisco Bay Area to Missoula?

    Sometimes travel dates aren't set in stone. If your preferred travel dates have some wiggle room, flexible dates will show you all the options when flying to Missoula from San Francisco Bay Area up to 3 days before/after your preferred dates. You can then pick the flights that suit you best.

Reviews of the top 3 airlines serving from San Francisco Bay Area to Missoula

 
Need help choosing which airline to fly with from San Francisco Bay Area to Missoula? KAYAK airline reviews give an overall score for each airline based on loads of factors, including comfort, boarding, in-flight entertainment and more, to make your decision easier. See airline scores according to verified KAYAK customer reviews.
7.9
Alaska AirlinesOverall score based on 12803 reviews
7.8Comfort
8.1Boarding
7.0Food
8.5Crew
7.0Entertainment
Airline reviews

same as the first when you pay for choice of seats than you don't receive them its very frustrating it was an extra fee of $80 dollars Craig Molan

8.0 ExcellentAnonymous, Jul 2026
Read more Alaska Airlines reviews

same as the first when you pay for choice of seats than you don't receive them its very frustrating it was an extra fee of $80 dollars Craig Molan

The flight was direct, anytime a flight is on time, and there's not a layover that risk yet another delay is a win!!

Didn’t even get on, check my flight to Seattle for details. Do better Alaska.

WOuld have liked coffee or pretzels but other than that, crew and pilot and flight were great. Seat was great, too.

The flight 2161 was cancelled after repeated delays; for some reason the crew and not the tower located in Billings, Montana made the call. A cancelled flight is not a big deal, it happens. It was very disappointing that upon cancelling the flight it was a free for all to get to the counter for rebooking. Priority seating and first class ticket holders should have been giving priority to get on the next available flight. Most would agree that the process of moving states away, w/a cat, is stressful. A cancelled flight, 90 minutes to rebook, no place to stay, medication that was to be refrigerated and trying to find a local pet friendly hotel significantly added to the stress. Had I been able to rebook (per priority boarding SOP) I could have called the place I had just checked out of as my room most likely was just as I'd left it, including with pet supplies (which also had to be repurchased). While waiting to rebook, many of us called Alaska Airlines 800 number hoping to get a new flight; the waiting time -- this is not a joke -- was eight (8) hours, which dropped to "just" two (2) hours about 45-minutes later. Due to the cancellation I had to spend $268.75 and I still have not been refunded for the change in ticket (first class to regular). Each time I've call, five times now, the wait time was absurd, or a message of call back is given. Hopefully visiting the airport and talking with an agent face to face will be the final chapter to this experience. Alaska has been my go to air travel for years, hopefully this trip was just a hiccup. A system that forces customer's to spend hours of their time (money) to get a just due refund is not a working system. I suggest Alaska Airlines hire more representatives to handle calls; time is more valuable than money, spending 90 minutes to rebook a flight, without the difference being automatic is absurd. There are things called computers, they do amazing things. Once the flight was cancelled, only three agents were working to rebook the PAX, This too was unacceptable. First class ticket holders pay for first-class service, this should include rebooking on flights that are cancelled. I recall a time when flights were cancelled the airline would offer a hotel should the next flight not be until the following day? I had no idea that was no longer SOP; many could return home, several of us could not. The agents were pleasant once the PAX had their turn to rebook, this was true down in baggage area as well. The flight out the next day was also what I'd come to find of Alaska Airlines.

The crew inside the airport for Alaska was rude, lazy and incompetent

Larger seats with a bit more room would be good! Thanks for all your hard work. I think we are all feeling a bit down these days economically and your positive attitudes, both from SJC to Seattle and from Seattle to Bozeman makes more of a difference than you can see! Thank you and Merry Christmas! I hope all your financial needs are met and that very good things come your way.

I liked that it didn't take 10 hours to drive here. Super short trip!

another delayed flight. no one at the desk kept us updated. we found out by an email as the desk was not even staffed up to expected takes off

The flight was delayed due to staff shortage and they efficiently fixed the problem with only 20 minutes delay time. All went smoothly (especially the landing) and passengers were great. Best job landing ever - never felt a bump!

Even though we arrived early and checked in, for some unexplained reason, our bags were removed from the plane and put on the next flight. It took over 12 hours after arriving to get our bags.

Internet connectivity still seems to be touchy on these flights, making it difficult to rely on it for getting work done.

Delta is always late. Ruined our first day of a short vacation. Timing is important. We pay to stay on an itinerary

Seats were not bad enough and uncomfortable good legroom in the emergency exit row we were in, but we were forbidden to hold my grandson on my lap for a little while, and the stewardess passed us saying it was against regulations which makes little or no sense when you’re 36,000 feet. The food snacks were really bad. Tasteless tasted like wallpaper, but we’re supposed to be protein bars, and the announcements were all completely incoherent because of the noise of the airplane and the lowness and crackly nature of the PA system.. this was disgraceful. No one in our party could understand a word of what the captain or the flight attendant were saying —not a word! The landing was a little hairy in a pretty stiff crosswind -we bounced before the plane stabilized on the runway

Flight team was great and we even arrived ahead of plan!

First The flight got delayed because one of the crew members was late and we couldn’t board until she arrived. Then we all boarded and got held in the tarmac for another 30 min.

Crew was absolutely fantastic and we’re so welcoming and friendly ❤️

It was as good as it could be. Flying is not a pleasant experience these days.

One of the best crews and best flights I’ve ever had! Really great experience

The bus ride from the terminal to board the plane is uncomfortable and stressful when making a connection.

The back to back mechanical delays from Denver to San Diego and then on my return flight from Denver to Great Falls it added extra time both ways

Flight was late, the only reason I almost missed my flight was that my connection was also late.

Baggage claim signs were not updated with my flight information, so I had to guess. The app wasn't updated either.

It was a short, comfortable flight. It did leave an hour late due to the pilot having to be replaced (family emergency) but that didn’t inconvenience myself & my friend. The situation was explained, eventually.

UA594 was delayed multiple times. I ended up getting picked up so I can make it in time for work 6AM on Monday, 7/6/2026

Boarded from a very small gate at LAX. Staff at gate had us line up, then waited 25 minutes to board without a word of explanation. Plane arrived on time then waited 20 minutes for a plane to vacate our gate. Majority of bags arrived after 15 minutes but it took an hour for a small number of remaining bags to be off-loaded despite my “priority” bag tag.

Great staff. Clean plane, but we were delayed for more than an hour due to maintenance issues and had to board another plane.

Lost one piece of luggage even though I checked in 2.5 hours before the flight

Sitting on the runway after we land for almost two hours! Not sure if we should blame United or Just Dumpy Vance.

Please please take consideration when setting cabin temperature. The vents were not functional and it was over 70 degrees in the cabin during the winter months when most people are used to much cooler indoor temperatures. I was down to my white t-shirt and the sweat pants I wore from Auckland to San Francisco and was sweating profusely and there was NO VENT!

Everything you need to know for your flight to Missoula

Information on the airport you'll fly into in Missoula