$158 Find Cheap Flights from San Francisco to Puerto Rico - Compare and Save

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Cheap Flights from San Francisco to Puerto Rico

Cheapest round-trip prices found by our users on KAYAK in the last 5 days
Aguadilla
Aguadilla1 stop$524
Ponce
Ponce1 stop$545
Culebra
Culebra2 stops$1,558
Mayagüez
Mayagüez2 stops$976
Aguadilla
Aguadilla1 stop$524
Ponce
Ponce1 stop$545
Culebra
Culebra2 stops$1,558
Mayagüez
Mayagüez2 stops$976
Booking Insights

KAYAK's insights & trends for San Francisco to Puerto Rico flights

Get data-powered insights and trends into flights from San Francisco to Puerto Rico to help you find the cheapest flights, the best time to fly and much more.

What is the cheapest month to fly from San Francisco to Puerto Rico?

The cheapest month for flights from San Francisco to Puerto Rico is October, when tickets cost $484 (return) on average. On the other hand, the most expensive months are December and July, when the average cost of round-trip tickets is $659 and $636 respectively.

How far in advance should I book a flight from San Francisco to Puerto Rico?

To get a below average price on the flight from San Francisco to Puerto Rico, you should book around 3 weeks before departure, which saves you about 17% compared to booking last minute. For the absolute cheapest price, our data suggests you should book 24 weeks before departure.

Good to know

Low season

September

Cheapest flight

$158
Best time to beat the crowds with an average 21% drop in price.
Most popular time to fly with an average 24% increase in price.
Flight from San Francisco to San Juan

FAQs - booking Puerto Rico flights

  • What is a good choice for public transportation to get from the San Juan Luis Munoz Marin International Airport to the downtown area?

    One of the most convenient and cost-effective ways to make this journey is aboard local bus route number D53, which offers service from the airport to very popular destinations in the downtown area, including the convention center, as well as to the very popular Old San Juan area.

  • If I plan on renting a car in Puerto Rico, what type of car seat laws for my children do I need to know about?

    When you drive a car in Puerto Rico, it is important to remember that every child under age four needs to ride in a child safety seat. Any child that is older than four but under the age of eight needs to travel in a booster seat, and all children 12 and under need to travel in the rear of a vehicle.

  • Will I need a passport or a visa to travel to Puerto Rico from the US?

    Because Puerto Rico is a United States territory, there is no need to take a passport or obtain a visa before traveling to Puerto Rico. Travelers must remember they do need some type of valid identification to travel to Puerto Rico, just as they would any other state in the United States.

  • If I want to stay at a hotel right at the San Juan Luis Munoz Marin International Airport, are there any good choices?

    One of the great things about this airport is that there are several hotels that have a location right at the entrance to the airport, and they include the Hampton Inn and suites San Juan and the Embassy Suites by Hilton San Juan.

  • How does KAYAK find such low prices on flights from San Francisco to Puerto Rico?

    KAYAK is a travel search engine. That means we look across the web to find the best prices we can find for our users. With over 2 billion flight queries processed yearly, we are able to display a variety of prices and options on flights from San Francisco to Puerto Rico.

  • How does KAYAK's flight Price Forecast tool help me choose the right time to buy my flight ticket from San Francisco to Puerto Rico?

    KAYAK’s flight Price Forecast tool uses historical data to determine whether the price for a flight from San Francisco to Puerto Rico is likely to change within 7 days, so travelers know whether to wait or book now.

  • What is the Hacker Fare option on flights from San Francisco to Puerto Rico?

    Hacker Fares allow you to combine one-way tickets in order to save you money over a traditional round-trip ticket. You could then fly from San Francisco to Puerto Rico with an airline and back with another airline.

  • What is KAYAK's "flexible dates" feature and why should I care when looking for a flight from San Francisco to Puerto Rico?

    Sometimes travel dates aren't set in stone. If your preferred travel dates have some wiggle room, flexible dates will show you all the options when flying from San Francisco to Puerto Rico up to 3 days before/after your preferred dates. You can then pick the flights that suit you best.

Top tips for finding cheap flights to Puerto Rico

  • One of the most popular ways to travel from San Francisco International Airport (SFO) to Puerto Rico is to travel to the San Juan Luis Munoz Marin International Airport (SJU). When traveling on this route, you will find one-stop flights aboard Delta Airlines, American Airlines, United Airlines, JetBlue, and Frontier Airlines.
  • One destination that is quite popular in Puerto Rico is the Aguadilla Borinquen Airport (BQN), which sits on the northwestern coast of the country. When traveling to this airport from San Francisco International Airport, you will find one-stop flights aboard JetBlue.
  • For travelers that are looking for a great way to get to the San Francisco International Airport from the downtown San Francisco area without having to drive their own car, a trip on the BART yellow or red line can have you at the airport in around 30 minutes.
  • Travelers that are looking for a quiet and comfortable location to wait for their flight to Puerto Rico at the San Francisco International Airport will be happy to know that this airport operates several airline lounges, including those operated by United Airlines, Alaska Airlines, and Delta Airlines.
  • If you plan on traveling with a pet or a service animal through the San Francisco International Airport, you will find animal relief areas available operating 24 hours per day at seven different locations throughout all of the terminal buildings at the airport. Each of the areas offers things such as drinking bowls and garbage areas for pet waste.

Reviews of the top 5 airlines serving from San Francisco to Puerto Rico

 
Need help choosing which airline to fly with from San Francisco to Puerto Rico? KAYAK airline reviews give an overall score for each airline based on loads of factors, including comfort, boarding, in-flight entertainment and more, to make your decision easier. See airline scores according to verified KAYAK customer reviews.
7.8
DeltaOverall score based on 8536 reviews
7.8Entertainment
8.5Crew
7.2Food
7.8Comfort
8.1Boarding
Airline reviews

Internet connectivity still seems to be touchy on these flights, making it difficult to rely on it for getting work done.

8.0 ExcellentMatthew, Aug 2026
Read more Delta reviews

Internet connectivity still seems to be touchy on these flights, making it difficult to rely on it for getting work done.

My son’s suitcase was left behind at SFO and did not make the flight.

Crew was absolutely fantastic and we’re so welcoming and friendly ❤️

Flight delayed four separate times. I’m now one hour hours late to landing.

The plane was an older model, so it wasn’t as comfortable as others. The flight attendants were not helpful during onboarding. It was a full flight so there was chaos finding space for baggage.

Awesome! On time flight, early arrival, and a complimentary upgrade!

Delta’s staff is unmatched. From the gate agents, to the pilots, to the flight attendants… all top of the industry.

Our flight from SFO to MSP was right on time on 11/15/2025. No delays. As we approached MSP at about 8 pm, we circled in the air until 8:40 pm so I don't call that efficient for MSP. I think the captain should announce the delay and why. (as if we all don't know that we are just circling around the area, slowing down, speeding up, slowing down.) Thank you. Marilyn Fischer

Excellent flight, the planes were newer, they did a nice job with boarding, great service overall.

Thank you for not flipping the plane on the run way. You guys get a 5 star rating for the flight!!!

Sitting in coach even in the larger leg space is extremely uncomfortable and the staff pay no attention.

The pilot was late so we didn’t take off til almost 2 hours late.

It was a short, comfortable flight. It did leave an hour late due to the pilot having to be replaced (family emergency) but that didn’t inconvenience myself & my friend. The situation was explained, eventually.

Excellent communication from the staff. We actually arrived early. Very friendly and professional staff.

No extra snacks were available. Meals quality is terrible. Crew was not friendly.

Lost one piece of luggage even though I checked in 2.5 hours before the flight

It was perfect! United Airlines staff was extremely caring, super friendly and professional

United has maintenance issues and can then never recover. No operations ability and simple issues always turn into multiple hours long cascading delays. Worst airline on earth.

I paid for a confirmed upgraded aisle seat and was moved to a center seat in the back of the plane at the last minute.

Horrifying Almost 2 million miles. Bring your own food and drink. One coffee or drink every three hours. Have to order meals on app more than 24 hours ahead Tiny and dirty bathrooms

Flight attendant made the flight very enjoyable. He was courteous and gave great care to the passengers

Not good. Flight crew, was not friendly and just shoved stuff at us. Not the way I like to travel.

Aside from the little delay, overall was flight good. Made it safely. Thanks!

Over the course of 7 months of travel, I can count on my hand the number of times the flight has departed on time. Majority of the instances have been related to non-weather reasons. Would not recommend flying this Airline

The food was okay and the space in business class was smaller than we had to Singapore.

The plane was spartan, the seats not that comfortable. It was like flying a super low budget airline. They charged for coffee!!! I have never, ever experienced that before.

I had no problems but the changing of planes that I was supposed to be on was confusing. Maybe it would be helpful to let people know your flight changed. Not everyone understands airports or how flying works.

Flight was delayed multiple times without giving any particular reason and the only thing that was communicated was that 'Aircraft is getting ready'. I was stuck at SFO airport for 15 hours and finally took Southwest Airlines flight back home to Dallas.

I was not clear if food was offered or not.

Agency very bad had to cancelled my booking too many changes in the flight changed my flight to 1 week

I have flown Jet Blue many times between JFK and SFO. I appreciate how clean the planes are, the ability to select my onboard entertainment and the flight crews have always been amazing! Unfortunately, my trip from SFO to JFK on August 23 was unusual. I arrived early at SFO for the 12:00 noon scheduled boarding. The flight was supposed to take off at 12:45pm but after sitting for a while, the plane had to return to the gate to have a generator inspected. After deplaning and then reboarding, we eventually took off around 3:30 pm. It was explained to the passengers that because the plane was using a backup generator, additional fuel was needed and the flight would take longer than originally scheduled. We were originally supposed to arrive at JFK at 9:32 pm but instead, arrived at midnight. Unfortunately, I was exhausted for the funeral I attended the next morning. As a passenger, I have always expected that the plane will be in good mechanical order and that all parts will function as expected. I'm not entirely certain that if I fly Jet Blue in the future, that I will have the same level of confidence that I had become accustomed to. Thanks for the opportunity to provide this feedback. Kathy Nigro

My screen didn’t work, my seat didn’t recline, the flight attendant was rude and completely dismissive, the airplane was freezing, the seats are way old, slanted and uncomfortable. I payed for a full ticket and got a horrific experience, with a flight attendant who dismissed me even though I was calm respectful and polite.

Seats were great, the staff was great, and the food was about the best I've had on a plane, and is especially the best of any US-based carrier I've flown. Free Wi-Fi was also great.

Rude crew member. She seemed annoyed at me without me saying a single word. Also loudly admonished me for having my bag next to my seat instead of tucked away before landing. Just telling me to put it away and guiding me without giving me a lecture would have been enough.

Too many long delays with JetBlue. Worst major airline that serves JFK but unfortunately I keep going back because of the prices.

Little snafu at boarding. Staff communicated with gate poorly. Flight attendant was rude making disembark early. This was an older mint class. Needs an overhaul for sure. Food was good. The male flight attendant was really nice.

I really liked the way snacks and drinks were available throughout the flight!!! The flight attendants were also all fantastic!

Always like Jet Blue! It seems, however, that people are getting bigger & seats are getting smaller! We had a very full flight and I couldn't get an aisle seat like I always do. I wish there were more leg room. People sitting next to me were very nice though so it was fine to disturb them if I needed to use the restroom. Otherwise the flight was fine but a bit long.

None of the in flight Direct TV worked. A better selection of Shows would have been better. The baggage was s low. Otherwise we enjoyed our flight!

the staff was very helpful and the airline was very good.

I really didn't like anything. Paid for my checked luggage online ($79) and then was told that I would have to paid another $79 for my carry on. Was not allowed to enter the terminal until 3 hours before my flight and when I finally was allowed to check my bag and enter, my flight was delayed 3 times. When I finally landed, we were all instructed to "run off the plane" as they had to do a quick turn around to Las Vegas. Me and several of my flying companions will never fly Frontier again.

They didn’t offer a water, even after I asked

Frontier had yet another flight cancellation. Have never made a complete round trip with this airline without at least one leg getting cancelled. Miserable flights - dirty, uncomfortable planes that apparently always have issues since I've had multiple delays and cancellations with them.

No frills for sure. No gate announcements about flight delay, not even water to drink on the flight.

I loked walking out on the tarmac to board and no first class. I didn't like that they have no snacks or onboard wifi to bide your time.

It was a redeye flight, so every passenger just wanted to sleep, but through the entire flight, the flight crew made announcements over the loudspeaker at maximum volume every few minutes making sleep impossible. For example: it’s 2am, and the crew decides to give an extremely detailed announcement about snacks and beverages for sale. And 3am is the perfect time to wake up everyone with a lengthy announcement about how to get a coffee refill and how to take advantage of new offer from frontier for a credit card.

While booking it was not obvious that I had to pay for carryon. Realized it only during check-in. Overall, meh!

Stop changing gates at sfo. When you are elderly going back for it’s not fun.

After 5 hours of delay, they cancelled the flight. Very disappointed

My flight to LA was cancelled. I waited at the airport for 3 hrs saying it was delayed and then all of a sudden it was cancelled. Frontier only gave me a voucher and refund but could not rebook me. Flights on other airlines were too expensive last minute. I had to drive down to LA and didn’t even take my return flight home since I had to drive. One of the worst airline experiences in my life. It’s crazy how airlines can just upend people’s plans just like that.

Everything you need to know for your flight from San Francisco to Puerto Rico

Information on your arrival and departure airports