$103 Find Cheap Flights from San Francisco to Puerto Rico

This is the cheapest one-way flight price found by a KAYAK user in the last 72 hours by searching for a flight from San Francisco to Puerto Rico departing on 8/9. Fares are subject to change and may not be available on all flights or dates of travel. Click the price to replicate the search for this deal.
1 adult
1 adult, Economy

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Best Puerto Rico Flight Deals from San Francisco

Cheapest round-trip prices found by our users on KAYAK in the last 72 hours
Aguadilla
Aguadilla1 stop$268
Mayagüez
Mayagüez2 stops$552
Aguadilla
Aguadilla1 stop$268
Mayagüez
Mayagüez2 stops$552

Cheap Flights from San Francisco to Puerto Rico

 
Here are some of the best deals found on KAYAK recently from the most popular airlines for round-trip flights from San Francisco to Puerto Rico that are departing in the next months. While these flights were available on KAYAK in the last 72 hours, prices and availability are subject to change and deals may expire.
Discover the best prices for you by selecting your travel dates on KAYAK.

Recent round-trip flight deals from San Francisco to Puerto Rico

Sun, Jul 27 - Thu, Jul 31
Frontier Logo
8:53 pm - 9:04 amSFO-SJU
9h 11m1 stop
Frontier Logo
3:40 am - 10:25 amSJU-SFO
9h 45m1 stop
$264Frontier
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Sat, Aug 23 - Fri, Sep 5
Frontier Logo
10:29 pm - 2:26 pmSFO-SJU
12h 57m1 stop
Frontier Logo
7:15 am - 9:21 pmSJU-SFO
17h 06m1 stop
$266Frontier
Find Deal
Fri, Aug 8 - Fri, Aug 15
Frontier Logo
8:53 pm - 2:01 amSFO-BQN
26h 08m1 stop
Frontier Logo
2:59 am - 10:25 amBQN-SFO
10h 26m1 stop
$268Frontier
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Tue, Sep 16 - Thu, Sep 25
Delta Logo
6:15 am - 10:00 pmSFO-SJU
12h 45m1 stop
Delta Logo
12:58 pm - 8:28 pmSJU-SFO
10h 30m1 stop
$369Delta
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Sun, Aug 10 - Mon, Aug 18
JetBlue Logo
10:56 am - 12:49 amSFO-SJU
10h 53m1 stop
JetBlue Logo
3:00 pm - 12:58 amSJU-SFO
12h 58m1 stop
$370JetBlue
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Tue, Aug 19 - Mon, Sep 29
United Airlines Logo
7:10 am - 8:38 pmSFO-SJU
10h 28m1 stop
United Airlines Logo
4:55 pm - 12:55 amSJU-SFO
11h 00m1 stop
$381United Airlines
Find Deal
Mon, Oct 13 - Wed, Oct 22
United Airlines Logo
12:43 am - 3:42 pmSFO-SJU
11h 59m1 stop
United Airlines Logo
1:05 am - 9:14 amSJU-SFO
11h 09m1 stop
$383United Airlines
Find Deal
Thu, Jul 24 - Tue, Jul 29
American Airlines Logo
11:59 pm - 3:35 pmSFO-SJU
12h 36m2 stops
American Airlines Logo
1:37 pm - 11:42 pmSJU-SFO
13h 05m2 stops
$392American Airlines
Find Deal
Sat, Aug 23 - Fri, Sep 5
American Airlines Logo
8:00 am - 11:59 pmSFO-SJU
12h 59m2 stops
American Airlines Logo
1:36 pm - 11:15 pmSJU-SFO
12h 39m2 stops
$393American Airlines
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Sun, Aug 10 - Wed, Aug 20
JetBlue Logo
4:30 pm - 8:49 amSFO-BQN
13h 19m1 stop
JetBlue Logo
9:40 am - 8:41 pmBQN-SFO
14h 01m1 stop
$598JetBlue
Find Deal
Useful Info

KAYAK's insights & trends for San Francisco to Puerto Rico flights

Get data-powered insights and trends into flights from San Francisco to Puerto Rico to help you find the cheapest flights, the best time to fly and much more.

What is the cheapest month to fly from San Francisco to Puerto Rico?

To calculate monthly average prices, KAYAK takes all prices for each month over the last year for round-trip flights from San Francisco to Puerto Rico, removes the top 0.1% to account for outliers, and then takes the median of all values for each month.

The cheapest month for flights from San Francisco to Puerto Rico is September, when tickets cost $423 (return) on average. On the other hand, the most expensive months are December and June, when the average cost of round-trip tickets is $764 and $571 respectively.

What’s the cheapest day of the week to fly from San Francisco to Puerto Rico?

The average price of all round-trip flights from San Francisco to Puerto Rico clicked on KAYAK for each day over the last 12 months.

When flying from San Francisco to Puerto Rico, you should consider leaving on a Tuesday and avoid Fridays if you are looking for the best rates. For your return to San Francisco, you’ll find the best rates on Saturdays and the most expensive ones on Mondays.

How far in advance should I book a flight from San Francisco to Puerto Rico?

To calculate weekly average prices, KAYAK takes all prices for each week before departure over the last year for round-trip flights from San Francisco to Puerto Rico, removes the top 0.1% to account for outliers, and then takes the average of all the values for each week.

To get a below average price on the flight from San Francisco to Puerto Rico, you should book around 2 weeks before departure. For the absolute cheapest price, our data suggests you should book 10 weeks before departure.


Good to know

Low seasonMay
High seasonDecember
Cheapest flight$103
Best time to beat the crowds with an average 6% drop in price.
Most popular time to fly with an average 35% increase in price.
Flight from San Francisco to San Juan

FAQs - booking Puerto Rico flights

  • What is a good choice for public transportation to get from the San Juan Luis Munoz Marin International Airport to the downtown area?

    One of the most convenient and cost-effective ways to make this journey is aboard local bus route number D53, which offers service from the airport to very popular destinations in the downtown area, including the convention center, as well as to the very popular Old San Juan area.

  • If I plan on renting a car in Puerto Rico, what type of car seat laws for my children do I need to know about?

    When you drive a car in Puerto Rico, it is important to remember that every child under age four needs to ride in a child safety seat. Any child that is older than four but under the age of eight needs to travel in a booster seat, and all children 12 and under need to travel in the rear of a vehicle.

  • Will I need a passport or a visa to travel to Puerto Rico from the US?

    Because Puerto Rico is a United States territory, there is no need to take a passport or obtain a visa before traveling to Puerto Rico. Travelers must remember they do need some type of valid identification to travel to Puerto Rico, just as they would any other state in the United States.

  • If I want to stay at a hotel right at the San Juan Luis Munoz Marin International Airport, are there any good choices?

    One of the great things about this airport is that there are several hotels that have a location right at the entrance to the airport, and they include the Hampton Inn and suites San Juan and the Embassy Suites by Hilton San Juan.

  • How does KAYAK find such low prices on flights from San Francisco to Puerto Rico?

    KAYAK is a travel search engine. That means we look across the web to find the best prices we can find for our users. With over 2 billion flight queries processed yearly, we are able to display a variety of prices and options on flights from San Francisco to Puerto Rico.

  • How does KAYAK's flight Price Forecast tool help me choose the right time to buy my flight ticket from San Francisco to Puerto Rico?

    KAYAK’s flight Price Forecast tool uses historical data to determine whether the price for a flight from San Francisco to Puerto Rico is likely to change within 7 days, so travelers know whether to wait or book now.

  • What is the Hacker Fare option on flights from San Francisco to Puerto Rico?

    Hacker Fares allow you to combine one-way tickets in order to save you money over a traditional round-trip ticket. You could then fly from San Francisco to Puerto Rico with an airline and back with another airline.

  • What is KAYAK's "flexible dates" feature and why should I care when looking for a flight from San Francisco to Puerto Rico?

    Sometimes travel dates aren't set in stone. If your preferred travel dates have some wiggle room, flexible dates will show you all the options when flying from San Francisco to Puerto Rico up to 3 days before/after your preferred dates. You can then pick the flights that suit you best.

  • What is the cheapest time of day to fly to Puerto Rico?

    The cheapest time of day to fly to Puerto Rico is generally in the afternoon, when round-trip flights cost $377 on average. Morning departures are around 20% more expensive than evening flights, on average. The most expensive time of day to fly to Puerto Rico is generally in the morning, which is peak travel time and where the average cost of a ticket is $549.

Top tips for finding cheap flights to Puerto Rico

  • One of the most popular ways to travel from San Francisco International Airport (SFO) to Puerto Rico is to travel to the San Juan Luis Munoz Marin International Airport (SJU). When traveling on this route, you will find one-stop flights aboard Delta Airlines, American Airlines, United Airlines, JetBlue, and Frontier Airlines.
  • One destination that is quite popular in Puerto Rico is the Aguadilla Borinquen Airport (BQN), which sits on the northwestern coast of the country. When traveling to this airport from San Francisco International Airport, you will find one-stop flights aboard JetBlue.
  • For travelers that are looking for a great way to get to the San Francisco International Airport from the downtown San Francisco area without having to drive their own car, a trip on the BART yellow or red line can have you at the airport in around 30 minutes.
  • Travelers that are looking for a quiet and comfortable location to wait for their flight to Puerto Rico at the San Francisco International Airport will be happy to know that this airport operates several airline lounges, including those operated by United Airlines, Alaska Airlines, and Delta Airlines.
  • If you plan on traveling with a pet or a service animal through the San Francisco International Airport, you will find animal relief areas available operating 24 hours per day at seven different locations throughout all of the terminal buildings at the airport. Each of the areas offers things such as drinking bowls and garbage areas for pet waste.

Reviews of the top 5 airlines serving from San Francisco to Puerto Rico

 
Need help choosing which airline to fly with from San Francisco to Puerto Rico? KAYAK airline reviews give an overall score for each airline based on loads of factors, including comfort, boarding, in-flight entertainment and more, to make your decision easier. See airline scores according to verified KAYAK customer reviews.
8.0
DeltaOverall score based on 7982 reviews
8.2Boarding
7.9Entertainment
7.9Comfort
7.3Food
8.5Crew
Airline reviews

My husband upgraded our seats and I don't know if it was due to the type of planet was or if they didn't upgrade our seats. We were supposed to be in I believe comfort seats and they were just as tight as any other seat- no leg room and we are very tall people but at least it wasn't extremely cold. My husband did put in a complaint about our seating because he paid extra and if we would have known that the space and the tightness would have been the same, we just would have gotten the emergency row emergency row seats that we normally get. We love Delta but both our flights coming home we're not good. Oh I forgot to mention that on our flight to Hawaii our luggage wheels got broke and we had to purse new luggage on vacation then we never had this problem so we didn't know protocol and reported it after we got home only for them to tell is we only had 24hrs to report the damage. Not sure what was going on with Delta this vacation trip.

4.0 OkayMrs., Jul 2025LAX - RDU
Read more Delta reviews

My husband upgraded our seats and I don't know if it was due to the type of planet was or if they didn't upgrade our seats. We were supposed to be in I believe comfort seats and they were just as tight as any other seat- no leg room and we are very tall people but at least it wasn't extremely cold. My husband did put in a complaint about our seating because he paid extra and if we would have known that the space and the tightness would have been the same, we just would have gotten the emergency row emergency row seats that we normally get. We love Delta but both our flights coming home we're not good. Oh I forgot to mention that on our flight to Hawaii our luggage wheels got broke and we had to purse new luggage on vacation then we never had this problem so we didn't know protocol and reported it after we got home only for them to tell is we only had 24hrs to report the damage. Not sure what was going on with Delta this vacation trip.

Crew was excellent. Comfort seats not as nice as other kinds of planes.

It was a great flight and the stewards and stewardess were all kind and accommodating!! The seats were comfortable and entertainment screen excellent!

There are 4 flights in consecutive gates with about the same departure time. Two flights were boarding at the same time. One was delayed or boarding would be happening at the same time. I am not sure what Delta and LAX need to do to have a better layout at the end of Terminal 2

There was a security issue at the airport and we were unable to land. We circled endlessly and then landed at another airfield for fuel. We then circled the airport again, almost landed but didn’t fully touch down before circling again. I am thankful to the crew for keeping us safe- the issue was the airline and staff at the airport getting us seats on our connecting flights. That part was hours of searching for someone and getting in double my steps.

Most aspects were good however if they assign boarding zones they ought to enforce them or why bother? My luggage from SAN-JFK-MAD was lost in NY so I without my main bag for two days upon arrival in Spain. They were helpful in tracking it and eventually delivered it to my hotel. The flub was because of a delay upon arrival in NYC. I had booked 2 1/2 hours between flights but we had to hold on the taxiway for an hour after landing while waiting for a clear gate which likely caused the baggage error.

Excellent flight, the planes were newer, they did a nice job with boarding, great service overall.

It would be nice if was given wires ear buds. Overall was a good experience was able to sleep on the plane

737-800 in first class was pretty dumpy. Seat had an uncomfortable angle, storage under the seat was blocked so even my very modest backpack didn't fit, power outlet was flaky. Weird tiny seat pockets that couldn't hold a gallon ziploc bag, emesis bag missing, etc. etc. No in-flight service due to turbulence. Crew was excellent, boarding was smooth despite a full flight.

Delta flight was on time, seats were comfortable, and crew was nice.

Horrific. They missed my connecting flight to San Diego. I didn’t get there until Monday at 9am when I had a mandatory court settlement conference scheduled at 6am since we had parties on the east coast. This caused many issues. All because United apparently forgot to hold the doors open until my flight landed that only had a 10 minute delay. This was the last flight to Southern California. So I couldn’t even rent a car to finish the trip. United cannot be trusted when traveling on specific days and times since weather didn’t have anything to do with the delays.

Very comfortable (upgraded to business class). The audio on my screen didn’t work, but I managed to play the audio through my phone while watching the screen.

Flight was late as pilot crew had to land at different airport in their previous flight. Passengers boarded and had to wait for pilots inside plane. Series of incomplete and unnecessary announcements by an annoying voice, rather than complete, informative announcements.

Breakfast was not loaded at SFO due to catering company change. Seems like a major airline at a major hub would have thought of something else or warned passengers to pick up food before boarding a 3 hour flight.

Boarding seemed to be organized bedlam. For what ever reason, preboarding took longer than 20 minutes. Made the plane 20 minutes late taking off. Luckily we arrived on time. Flight crew seemed very friendly. Only slight turbulence.

They hired a new catering company the same day of my flight. They botched the job by not delivering the right carts and after THREE HOURS waiting, the flight crew timed out (flight was 19 hours long and FAA rules state crew can’t work more than 14 hours long). So they CANCELED OUR FLIGHT!! Worst experience ever. Avoid UAL at all costs.

The personnel were professional and friendly. The Boeing 737 Max 9 is too claustrophobic and was very warm at both airport gates, and still warm in the air.

While the staff was pleasant and helpful, the following observations are for your awareness. There was some delay on the tarmac on take off and landing. The paid lunch/food offerings were limited. Entertainment was only available on WiFi at a cost.

get E+, a must for 5 hours flight if you are tall

Liked fold flat bed. Didn’t like having no window. Didn’t like poor choice of food and being served dinner very late, hours after take off of a 7:40pm flight. Servers not friendly. Food horrible in business class.

Spend hours delayed with no food, water anything sitting on the aieplane with no ability to eat or use the restroom. My entire experience was the absolute worst. I will never fly jet Blue again.

It would have been nice if they had offered more than one set of snacks

Seats were not too comfortable; it was impossible to locate the underseat power outlet.

You get what you pay for with JetBlue. Every little thing costs more, you are nickel and dimed until the end. Entertainment doesn’t function. Flight attendants do the bare minimum.

The check in and boarding process was a bit of a cluster. Two people at the counter to check in, three random lines that nobody knew which was for what, and people kept getting shuffled from one line to another for no apparent reason because then they’d get shuffled back and end up getting out further back in the line than they were originally. I only had to hand my already checked bag over and it took 45 minutes. I was never assigned a seat so when I tried to board I was pulled out of line again while someone had to try to manually assign me a seat. During the flight I got up to go to the bathroom, and there was an attendant in the aisle offering pillows etc and it was a 30 min wait unbuckled standing by the bathrooms because she said I couldn’t go past her. First and last time flying jet blue to be honest.

Communication since no reason or explanation was given for 3 hrs delay

The flight departed more than 1 hour late. Leg room is bigger than most airlines

Flight was delayed several 3 hours - no reason was given and no communication what so ever.

No overhead baggage room even though I was seated in row 2. Consequently had to check in my carry on bag. Baggage carousel was jammed. Took 45 min to get my bag.

Excellent from start to finish. All staff members were amazing!

AA re-routed flight from HNL to LAX due to delay. My group of 3 with reserved seats in row 9 was broken up, with one assigned to a middle seat, another in the last row of the plane. Not happy. No explanation to the delay. No apologies. No compensation. Would have been nice to be offered an Admiral Club admission or a voucher for the extra 3 hours of layover in LAX. Could not hear the boarding gate announcements in LAX. Adjacent gate was boarding at the same time. Loud speakers were competing against each other. Barely made my boarding group.

Almost a 6 hour flight and the only food option is a cheese plate… and chips. Also how is it there are no options for texting on American. I’ll be going back to delta and united.

Bad food, small seats that didn’t recline. I thought I was buying a quantas ticket so I feel like I got scammed

The chair cushions may need an upgrade. I have been noticing they are so worn out, thin so you’d sit in a dip 😄. Other than that, all was an enjoyable trip. Thanks AA!

Cramped seats. FAA should make airlines have more legroom, for even short people complain

Flight was full, and would have preferred an aisle seat, but due to getting a late ticket ,the seat I had was adequate. The flight crew were very help full and hard working. Food and drink were excellent for the 11hr flight. Overall I was pleased with flight, and would recommend British Airways again.

Eventless. It was a good flight and good crew. Can’t complaint.

Very helpful ground crew after an earlier flight delay and being rebooked on a different flight.

British Airways staff are very polite and willing to help.

The plane was late and then sat on the runway for almost 45 minutes before taking off.

Cancelled flight after I arrived at airport after 75 min drive and parking. Next flight was 4 days in the future. Had to scramble and buy a much more expensive flight on another carrier.

I liked the turn-style feature at gate 209B at LAX. Very efficient process. The gate staff also made several, clearly directed announcements so I felt very informed.

The seats were awful, hard plastic covered in sheet vinyl. The airline tries to scam you into paying extra to get seat together when the flight wasn’t full. They were going to separate a family with young children but my wife who had a row to herself gave up her seat so the young mom could be with her young boys. I’m never giving this airline my money again.

It was a short flight so no food or entertainment….

Frontier had yet another flight cancellation. Have never made a complete round trip with this airline without at least one leg getting cancelled. Miserable flights - dirty, uncomfortable planes that apparently always have issues since I've had multiple delays and cancellations with them.

Flight was delayed 3 times, would have been nice to have received text message instead of email notifications. Frontier app wasn’t even updated accordingly, no gate number disclosed. No agent at front desk of gate to inform of delay. Very confused and left if the dark

They changed the timing , first delayed by 4 hours then went back to 40 mins late, we had to run back to airport to not miss our flight. This is ridiculous

No frills for sure. No gate announcements about flight delay, not even water to drink on the flight.

I loked walking out on the tarmac to board and no first class. I didn't like that they have no snacks or onboard wifi to bide your time.

It was a redeye flight, so every passenger just wanted to sleep, but through the entire flight, the flight crew made announcements over the loudspeaker at maximum volume every few minutes making sleep impossible. For example: it’s 2am, and the crew decides to give an extremely detailed announcement about snacks and beverages for sale. And 3am is the perfect time to wake up everyone with a lengthy announcement about how to get a coffee refill and how to take advantage of new offer from frontier for a credit card.

Everything you need to know for your flight from San Francisco to Puerto Rico

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