$178 Find Cheap Flights from San Francisco to Puerto Rico

This is the cheapest one-way flight price found by a KAYAK user in the last 72 hours by searching for a flight from San Francisco to Puerto Rico departing on 4/6. Fares are subject to change and may not be available on all flights or dates of travel. Click the price to replicate the search for this deal.
1 adult
1 adult, Economy, 0 bags

KAYAK searches hundreds of travel sites at once for deals on flights to Puerto Rico

Travelers love KAYAK
41,299,237 searches in the past 7 days on KAYAK

Save 23% or moreCompare multiple travel sites with one search.

Track pricesNot ready to book? Create a price alert for when prices drop.

Bundle and saveSave money when you bundle your flight + hotel.

Filter your dealsChoose cabin class, free Wi-Fi and more.

Flight Deals
Booking Insights
Flight Deals

Cheap Flights from San Francisco to Puerto Rico

Cheapest round-trip prices found by our users on KAYAK in the last 72 hours
Aguadilla
Aguadilla1 stop$376
Mayagüez
Mayagüez2 stops$939
Aguadilla
Aguadilla1 stop$376
Mayagüez
Mayagüez2 stops$939

Book Cheap San Francisco to Puerto Rico Plane Tickets

 
Here are some of the best deals found on KAYAK recently from the most popular airlines for round-trip flights from San Francisco to Puerto Rico that are departing in the next months. While these flights were available on KAYAK in the last 72 hours, prices and availability are subject to change and deals may expire.
Discover the best prices for you by selecting your travel dates on KAYAK.

Recent round-trip flight deals from San Francisco to Puerto Rico

Wed, Apr 15 - Tue, Apr 21
Multiple Airlines Logo
10:38 pm - 7:14 pm
SFO
-
SJU
17h 36m
1 stop
Multiple Airlines Logo
11:30 am - 11:25 pm
SJU
-
SFO
38h 55m
2 stops
$368Multiple Airlines
Mon, Apr 13 - Fri, Apr 17
Frontier Logo
10:03 pm - 5:59 pm
SFO
-
SJU
16h 56m
2 stops
Frontier Logo
3:23 pm - 5:34 pm
SJU
-
SFO
29h 11m
1 stop
$369Frontier
Fri, Apr 10 - Fri, Apr 17
Frontier Logo
8:14 pm - 12:21 pm
SFO
-
SJU
37h 07m
2 stops
Frontier Logo
3:23 pm - 5:34 pm
SJU
-
SFO
29h 11m
1 stop
$371Frontier
Sat, May 9 - Mon, May 18
Multiple Airlines Logo
10:38 pm - 2:08 pm
SFO
-
SJU
12h 30m
1 stop
Multiple Airlines Logo
12:15 pm - 11:56 pm
SJU
-
SFO
14h 41m
1 stop
$374Multiple Airlines
Mon, Apr 13 - Sun, Apr 19
Multiple Airlines Logo
10:03 pm - 7:50 pm
SFO
-
SJU
18h 47m
1 stop
Multiple Airlines Logo
2:59 am - 5:34 pm
SJU
-
SFO
17h 35m
2 stops
$375Multiple Airlines
Thu, Jul 30 - Mon, Aug 3
Frontier Logo
11:59 pm - 11:51 am
SFO
-
BQN
8h 52m
1 stop
Frontier Logo
12:46 pm - 10:52 pm
BQN
-
SFO
13h 06m
1 stop
$376Frontier
Sat, Apr 25 - Sat, May 23
JetBlue Logo
8:25 am - 1:36 am
SFO
-
BQN
14h 11m
1 stop
JetBlue Logo
2:18 pm - 12:33 am
BQN
-
SFO
13h 15m
1 stop
$459JetBlue
Sat, Apr 25 - Tue, May 19
JetBlue Logo
8:25 am - 1:36 am
SFO
-
BQN
14h 11m
1 stop
JetBlue Logo
2:25 pm - 11:56 pm
BQN
-
SFO
12h 31m
1 stop
$496JetBlue
Wed, May 13 - Thu, May 21
United Airlines Logo
10:35 pm - 4:13 pm
SFO
-
CPX
14h 38m
2 stops
United Airlines Logo
10:30 am - 10:56 pm
CPX
-
SFO
15h 26m
2 stops
$1,422United Airlines
Thu, Jun 25 - Fri, Jul 3
United Airlines Logo
12:50 am - 5:21 pm
SFO
-
CPX
13h 31m
2 stops
United Airlines Logo
10:48 am - 9:20 pm
CPX
-
SFO
13h 32m
2 stops
$1,558United Airlines
Booking Insights

KAYAK's insights & trends for San Francisco to Puerto Rico flights

Get data-powered insights and trends into flights from San Francisco to Puerto Rico to help you find the cheapest flights, the best time to fly and much more.

What is the cheapest month to fly from San Francisco to Puerto Rico?

To calculate monthly average prices, KAYAK takes all prices for each month over the last year for round-trip flights from San Francisco to Puerto Rico, removes the top 0.1% to account for outliers, and then takes the median of all values for each month.

The cheapest month for flights from San Francisco to Puerto Rico is May, when tickets cost $404 (return) on average. On the other hand, the most expensive months are December and June, when the average cost of round-trip tickets is $563 and $537 respectively.

How far in advance should I book a flight from San Francisco to Puerto Rico?

To calculate weekly average prices, KAYAK takes all prices for each week before departure over the last year for round-trip flights from San Francisco to Puerto Rico, removes the top 0.1% to account for outliers, and then takes the average of all the values for each week.

To get a below average price on the flight from San Francisco to Puerto Rico, you should book around 2 weeks before departure, which saves you about 6% compared to booking last minute. For the absolute cheapest price, our data suggests you should book 24 weeks before departure.

Good to know

Low seasonOctober
Cheapest flight$178
Best time to beat the crowds with an average 6% drop in price.
Most popular time to fly with an average 19% increase in price.
Flight from San Francisco to San Juan

FAQs - booking Puerto Rico flights

  • What is a good choice for public transportation to get from the San Juan Luis Munoz Marin International Airport to the downtown area?

    One of the most convenient and cost-effective ways to make this journey is aboard local bus route number D53, which offers service from the airport to very popular destinations in the downtown area, including the convention center, as well as to the very popular Old San Juan area.

  • If I plan on renting a car in Puerto Rico, what type of car seat laws for my children do I need to know about?

    When you drive a car in Puerto Rico, it is important to remember that every child under age four needs to ride in a child safety seat. Any child that is older than four but under the age of eight needs to travel in a booster seat, and all children 12 and under need to travel in the rear of a vehicle.

  • Will I need a passport or a visa to travel to Puerto Rico from the US?

    Because Puerto Rico is a United States territory, there is no need to take a passport or obtain a visa before traveling to Puerto Rico. Travelers must remember they do need some type of valid identification to travel to Puerto Rico, just as they would any other state in the United States.

  • If I want to stay at a hotel right at the San Juan Luis Munoz Marin International Airport, are there any good choices?

    One of the great things about this airport is that there are several hotels that have a location right at the entrance to the airport, and they include the Hampton Inn and suites San Juan and the Embassy Suites by Hilton San Juan.

  • How does KAYAK find such low prices on flights from San Francisco to Puerto Rico?

    KAYAK is a travel search engine. That means we look across the web to find the best prices we can find for our users. With over 2 billion flight queries processed yearly, we are able to display a variety of prices and options on flights from San Francisco to Puerto Rico.

  • How does KAYAK's flight Price Forecast tool help me choose the right time to buy my flight ticket from San Francisco to Puerto Rico?

    KAYAK’s flight Price Forecast tool uses historical data to determine whether the price for a flight from San Francisco to Puerto Rico is likely to change within 7 days, so travelers know whether to wait or book now.

  • What is the Hacker Fare option on flights from San Francisco to Puerto Rico?

    Hacker Fares allow you to combine one-way tickets in order to save you money over a traditional round-trip ticket. You could then fly from San Francisco to Puerto Rico with an airline and back with another airline.

  • What is KAYAK's "flexible dates" feature and why should I care when looking for a flight from San Francisco to Puerto Rico?

    Sometimes travel dates aren't set in stone. If your preferred travel dates have some wiggle room, flexible dates will show you all the options when flying from San Francisco to Puerto Rico up to 3 days before/after your preferred dates. You can then pick the flights that suit you best.

Top tips for finding cheap flights to Puerto Rico

  • One of the most popular ways to travel from San Francisco International Airport (SFO) to Puerto Rico is to travel to the San Juan Luis Munoz Marin International Airport (SJU). When traveling on this route, you will find one-stop flights aboard Delta Airlines, American Airlines, United Airlines, JetBlue, and Frontier Airlines.
  • One destination that is quite popular in Puerto Rico is the Aguadilla Borinquen Airport (BQN), which sits on the northwestern coast of the country. When traveling to this airport from San Francisco International Airport, you will find one-stop flights aboard JetBlue.
  • For travelers that are looking for a great way to get to the San Francisco International Airport from the downtown San Francisco area without having to drive their own car, a trip on the BART yellow or red line can have you at the airport in around 30 minutes.
  • Travelers that are looking for a quiet and comfortable location to wait for their flight to Puerto Rico at the San Francisco International Airport will be happy to know that this airport operates several airline lounges, including those operated by United Airlines, Alaska Airlines, and Delta Airlines.
  • If you plan on traveling with a pet or a service animal through the San Francisco International Airport, you will find animal relief areas available operating 24 hours per day at seven different locations throughout all of the terminal buildings at the airport. Each of the areas offers things such as drinking bowls and garbage areas for pet waste.

Reviews of the top 5 airlines serving from San Francisco to Puerto Rico

 
Need help choosing which airline to fly with from San Francisco to Puerto Rico? KAYAK airline reviews give an overall score for each airline based on loads of factors, including comfort, boarding, in-flight entertainment and more, to make your decision easier. See airline scores according to verified KAYAK customer reviews.
7.9
DeltaOverall score based on 8291 reviews
7.8Entertainment
7.9Comfort
8.5Crew
7.2Food
8.1Boarding
Airline reviews

I was in first class and literally the men behind me were so aggressively loud I moved myself to economy. This has become so common on Delta - people using audio without headphones, and men on 12am / late night flights drinking and yelling to talk to each other which prevents anyone around them from resting. Pretty crazy to have to move from first to economy (poorer service, less comfort...). Wild wild. Looking into other airlines.

2.0 MediocreIsabella, Mar 2026
SJC - SLC
Read more Delta reviews

I was in first class and literally the men behind me were so aggressively loud I moved myself to economy. This has become so common on Delta - people using audio without headphones, and men on 12am / late night flights drinking and yelling to talk to each other which prevents anyone around them from resting. Pretty crazy to have to move from first to economy (poorer service, less comfort...). Wild wild. Looking into other airlines.

Flight was delayed by 3-hours and their fix was… complimentary pretzels.

The crew, and fellow passengers, were super gracious and kind. There seemed to be plenty of bin space even though the plane was full. It’s nice to get a glass of wine with dinner in Premiere seating, and there was a lot of food.

Everything I mentioned earlier - the airbus was more comfortable indeed and the experience was further enhanced.

The plane was an older model, so it wasn’t as comfortable as others. The flight attendants were not helpful during onboarding. It was a full flight so there was chaos finding space for baggage.

Awesome! On time flight, early arrival, and a complimentary upgrade!

It was nt delta. It was aeromexo. Service was awful. They served a very small drink and NO snack for a 3hr and 35min flight. Then for the first 30 min of the flight is was talk and talk over head interruption the movie/ show i picked to watch.

Delta One is extraordinary. I fly business when somebody hires me. I just wonder why there is such a chasm between business class and the insanely inhumane and nonsensical coach. The seats are not large enough to fit even my tiny wife. We fly 10% of what we did because we don’t want to pay 5-10 k but for $400 it’s unbearable. It seems like the accountants took over and made stupid decisions. Screw in 20 extra seats and make it so unbearable that people fly 90% less. Just put the damn price up and put some proper chairs in. But business, yay.

Delta’s staff is unmatched. From the gate agents, to the pilots, to the flight attendants… all top of the industry.

The flight was delayed for about 2 hrs. Other than it, it was good.

The 777’s economy seat’s legroom was more tolerable than expected. I appreciate the reclining mechanism which slides the seat forward to minimize cannibalizing the space behind. The food was terrible: very salty.

Seats are uncomfortable. This has been a trend in the industry for decades. Trying to fit more seats on each plane to increase profits at the expense of the passenger.

Staff were good. My seat was in need of repair, but for a short flight was not problematic. Usual basic snack and drink setup that you'll find on any US carrier. Over, a decent, basic flight.

Flight delayed for more than 16 hrs and no effort was spent to provide an alternate

We had turbulence ever 1/2 hr or so and the captains announcements were SOOOO LOUD

it was a very short flight so my expectations were low.

Entertainment kept turning itself off. Gave up on watching a movie.

Very disappointing given gate agent behavior. Filed a formal complaint with United.

Terrible. No customer service, no food, no drinks on a 6 hour premier economy booking.

The flight crew where really good. Better then the crew from BNE to SFO

My check in was stressful. I somehow lost my seat from my original booking, the plane showed no availability/no seat when it was time to check-in. I called and was instructed to try to get a seat at the airport. I asked if it was a full flight and the travel agent said the site showed some seating but was not able to secure one for me. Why not? On my way to the airport the app finally revealed one available seat towards the back of the aircraft that I was able to book. It ended up being an overbooked flight, so glad I wasn't stuck.

Flights with JetBlue from San Diego to Boston are a miserable experience. The flight was delayed about 1.5 hours due to “weather” supposedly but the flights for other airlines left on time so it just have been some kind of weather that only affects JetBlue. I had a small carry on - purse. The crew stored it in a bin 2 rows down from me because they were using the bin next to my seat for other people’s stuff. The TV screen in the emergency row seats does not work. It just was awful from start to finish. When we landed, we had to sit inside the plane for a very long time because the plane had to be moved to a different gate.

They made me check my bag and I didn't need to as there was overhead space available. I paid for a seat towards the front of the plane and it didn't recline. I requested a refund and they declined to give me one.

I have to congratulate Kayak (and Dylan the Chatdeal agent) because because when we decided extended our trip in Florida by two days, there were many direct flights oprions back to Boston available on the Friday we wanted to fly on the JetBlue website, but once I canceled the original JetBlue flight on their website, those direct return options disappeared immediatley! I think it's a game JetBlue plays. . Luckily, I checked Kayak and they had a direct flight that wasn't appearing on JetBlue's website and so I booked it, and we were able to fly home direct through the Kayak booking when JetBlue was offering nothing (even though I have been a True Blue member for 20 years, and also am a Mosaic member). So much for loyalty- their algorithm for booking is like a shell game. JetBlue used to be a good company but now they're worse than anyone. Also I was originally booked this trip to Florida, two months before the departure date, I booked the trip on JetBlue's website and then after the payment part, they said there was a problem and that I needed to do the booking again, so when I immediately went to rebook , the price had gone up 30%! I called them and it sounded like they had heard this so many times before and the guy told me to check back in 10 minutes and the price would be back to where it was when I was booking- it but it never was. How could the price go up 30% in one minute two months before the flight???? They're playing a game with their customers. Anyways, I booked a cheaper flight then at a less convenient time. So fast forward two months the night before the 7 AM flight, they sent me an email at midnight when I was sleeping to let me know that my flight at 7 AM had been canceled. The only thing they offered was a flight that night from from a different airport (Providence) to a different airport in Florida (West Palm Beach) or a flight two days later. No compensation, nothing. They couldn't of tried to get another plane to the Boston airport? They had all night to do it. I passed on their ridiculous options and flew with Delta and it was a great experience. Of course, I had to pay a lot more booking on the same day, but JetBlue doesn't care. I put in a lengthy complaint with the agent who assured me someone would get back to me by email within three days and I haven't heard a thing. JetBlue used to be a good company but now they're among the worst. The only thing they still have is decent legroom, but the corporate bean counters will probably start taking that away too.

We were made to wait in the airport for six hours for a flight that was ultimately canceled.

Both flights were significantly delayed. The flight experience itself was great.

My flight got delayed and eventually canceled, then rescheduled. I and several others had a connection from Boston to Paris and asked several times if we would make it. They assured us we would and then rebooked us mid flight without our consent and closed doors early even though they said they communicated we were a bit delayed. We got stranded in Boston and I opted with being rebooked for a different connection to France since they refused to pay for a Hotel. I've now been in Europe for 5 days and still haven't recieved my bags. There was absolutely no urgency for the fact that I'm in a foreign country with absolutely no change of clothes or any of my medication. Such an overwhelming and frustrating experience.

Automated scanning was slow and somewhat haphazard. Too many people were unfamiliar with the tech and were forced to learn on the fly. The hands off approach of the gate staff made it more uncomfortable. This needs work. Overall the flight and cabin crew were excellent.

The crew for the flight was A+ top notch. They were friendly and professional and made the flight a very relaxing and enjoable.

Rude crew member. She seemed annoyed at me without me saying a single word. Also loudly admonished me for having my bag next to my seat instead of tucked away before landing. Just telling me to put it away and guiding me without giving me a lecture would have been enough.

Dloght delayed by 2.5 hrs . Common theme in my last four american floghts

They are rarely on time! Very hard to plan your travels when flights or connections keep getting delayed.

My seat was assigned last row behind restrooms No legroom’s I’m very Pettit Still was not comfortable Food choice was excellent

The worst Airline ever. They centered my second flight and leave me in NY. They don’t have any representatives at the airport and they don’t respond to calls. Basically I got stuck. I will never purchase through there again.

The chicken wrap was tiny ($13 for what looked like a 1/3 of a normal wrap?) and disgusting.

Mediocre would be best description. Food bland. Seat biz class uncomfortable to sleep. Crew never dimmed lights completely in an overnight flight to Europe. Would avoid AA if possible.

Small plane, poor meal choices for first class, bad terminal and boarding experience at LAX

Massimo, flight attendant was very authentic, attentive - wonderful. Food/wrap was just okay.

Experience was great. The best part is the free Wi-Fi connection which helps me to work on the flight

The flight was fine. It's the satellite terminal that supports American eagle flights is what sucks. There is only one food option and everything there is way overpriced. I mean I know it's airport pricing, but it's even crazier than that. I bought a sandwich in a plastic container for $18.

Remind customers of the need to have passport or new ID for boarding.

The flight never took off and we spent 7 hours at the airport

First of all we hade waited 3 hours in the airplane waiting to leave. Second the return schedule was changed and it messed up my entire vaction. I won't buy never again another flight and recommend to nobody traveling with them.

It was ok. It was expensive to check 2 bags ($75.00 per bag), and then it took a long time to wait for shuttle to take us from one terminal to the terminal where the plane was taking off at LAX. And all of this for a flight where we had to pay for any food or drink that was not water.

When I wanted to check in 3 hours prior to boarding time, the employees mentioned “a little over an hour delay” so I waited for an hour then I went to go look for food in the terminal and most people from that flight were in the same area looking for food. Finally I decided after food to check to see if it’s anytime closer and now it’s 2 mins until boarding closes?! What are you kidding me? I didn’t receive anything via sms about boarding now nor via email or on the intercom. I luckily made it through, barely, and then there’s no room for my carry on mind you I’m in the very first row so I had to place my purse in one further row back and my carry on sections down. Not sure who pays for better seats to get your stuff placed all over the plane but that was the worst experience I’ve ever had flying with anyone.

This airline sucks. They offer low rates then charge you for everything, the app does not work well, the seats are the most uncomfortable. Maintenance issues on the flight, and you still have to sit through their credit card commercials. People are nice enough but does not make up for overall poor experience.

The worst. They don’t follow procedure for boarding per group. Flight got delayed for no understandably reasons, they changed our destination from PR to Miami, left us inside a plane for more than 8 hours, then cancelled flight in Miami leaving us stranded. Poorly managed re-accommodation for a new flight and overnight stay so I have to spend in a new ticket and my own hotel room to been able to get to my office next day. Lost 2 days of work and as a doctor, patients loosing their appointments. to other flights and besides

Cancelled flight after I arrived at airport after 75 min drive and parking. Next flight was 4 days in the future. Had to scramble and buy a much more expensive flight on another carrier.

I liked the turn-style feature at gate 209B at LAX. Very efficient process. The gate staff also made several, clearly directed announcements so I felt very informed.

I liked the price of the flight and the chance to buy a seat with no person seated in the middle seat.. Also the flight was right on time.

Everything you need to know for your flight from San Francisco to Puerto Rico

Information on your arrival and departure airports