$61 Find Cheap Flights from Jacksonville to Puerto Rico

This is the cheapest one-way flight price found by a KAYAK user in the last 72 hours by searching for a flight from Jacksonville to Puerto Rico departing on 6/2. Fares are subject to change and may not be available on all flights or dates of travel. Click the price to replicate the search for this deal.
1 adult
1 adult, Economy, 0 bags

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Cheap Flights from Jacksonville to Puerto Rico

Cheapest round-trip prices found by our users on KAYAK in the last 72 hours
Aguadilla
Aguadilla1 stop$306
Ponce
Ponce1 stop$342
Culebra
Culebra1 stop$610
Aguadilla
Aguadilla1 stop$306
Ponce
Ponce1 stop$342
Culebra
Culebra1 stop$610

Book Cheap Jacksonville to Puerto Rico Plane Tickets

 
Here are some of the best deals found on KAYAK recently from the most popular airlines for round-trip flights from Jacksonville to Puerto Rico that are departing in the next months. While these flights were available on KAYAK in the last 72 hours, prices and availability are subject to change and deals may expire.
Discover the best prices for you by selecting your travel dates on KAYAK.

Recent round-trip flight deals from Jacksonville to Puerto Rico

Mon, Jun 8 - Sat, Jun 13
Frontier Logo
11:28 am - 2:33 pm
JAX
-
SJU
3h 05mnonstop
Frontier Logo
7:00 am - 10:25 am
SJU
-
JAX
3h 25mnonstop
$147Frontier
Mon, Jun 8 - Mon, Jun 15
Frontier Logo
11:28 am - 2:33 pm
JAX
-
SJU
3h 05mnonstop
Frontier Logo
7:00 am - 10:25 am
SJU
-
JAX
3h 25mnonstop
$148Frontier
Fri, Jun 12 - Tue, Jun 16
Frontier Logo
11:20 am - 2:29 pm
JAX
-
SJU
3h 09mnonstop
Frontier Logo
7:00 am - 10:25 am
SJU
-
JAX
3h 25mnonstop
$162Frontier
Sat, Jun 13 - Tue, Jun 16
Frontier Logo
11:20 am - 2:29 pm
JAX
-
SJU
3h 09mnonstop
Frontier Logo
7:00 am - 10:25 am
SJU
-
JAX
3h 25mnonstop
$163Frontier
Wed, Sep 9 - Tue, Sep 15
JetBlue Logo
7:05 am - 1:24 pm
JAX
-
BQN
6h 19m
1 stop
JetBlue Logo
2:20 pm - 7:52 pm
BQN
-
JAX
5h 32m
1 stop
$306JetBlue
Wed, Sep 2 - Sun, Sep 13
JetBlue Logo
7:12 am - 1:26 pm
JAX
-
BQN
6h 14m
1 stop
JetBlue Logo
2:20 pm - 7:52 pm
BQN
-
JAX
5h 32m
1 stop
$318JetBlue
Thu, Jun 18 - Sat, Jun 27
Multiple Airlines Logo
11:20 am - 5:21 pm
JAX
-
CPX
6h 01m
1 stop
Multiple Airlines Logo
1:06 pm - 10:25 am
CPX
-
JAX
21h 19m
1 stop
$610Multiple Airlines
Tue, Jun 2 - Fri, Jun 5
Multiple Airlines Logo
11:28 am - 6:30 pm
JAX
-
VQS
7h 02m
1 stop
Multiple Airlines Logo
3:18 pm - 10:33 am
VQS
-
JAX
19h 15m
1 stop
$637Multiple Airlines
Thu, Aug 20 - Sun, Aug 23
United Airlines Logo
7:05 am - 5:21 pm
JAX
-
CPX
10h 16m
2 stops
United Airlines Logo
10:48 am - 11:20 pm
CPX
-
JAX
12h 32m
2 stops
$1,558United Airlines
Thu, Jul 23 - Sat, Jul 25
United Airlines Logo
7:10 pm - 5:21 pm
JAX
-
CPX
22h 11m
2 stops
United Airlines Logo
10:48 am - 11:59 pm
CPX
-
JAX
13h 11m
2 stops
$1,702United Airlines
Booking Insights

KAYAK's insights & trends for Jacksonville to Puerto Rico flights

Get data-powered insights and trends into flights from Jacksonville to Puerto Rico to help you find the cheapest flights, the best time to fly and much more.

What is the cheapest Jacksonville to Puerto Rico flight route?

Data is based on round-trip flight searches on KAYAK over the past month.

The cheapest ticket to Puerto Rico from Jacksonville found in the last 7 days was to San Juan, at $100 round-trip. The most popular route is from Jacksonville (JAX) to San Juan Luis Munoz Marin Intl Airport (SJU), and the cheapest round-trip airline ticket found on this route in the last 7 days was $100.

What is the cheapest time of day to fly to Puerto Rico?

The average price for all round-trip flights from Jacksonville to Puerto Rico depending on the time of departure, clicked by users on KAYAK in the last 2 weeks.

The cheapest time of day to fly to Puerto Rico is generally in the morning, when round-trip flights cost $257 on average. Morning departures are around 21% cheaper than evening flights, on average. The most expensive time of day to fly to Puerto Rico is generally in the afternoon, which is peak travel time and where the average cost of a ticket is $333.

Can I save money by flying with a layover from Jacksonville to Puerto Rico?

The average round-trip price for all non-stop flights, flights with one layover, and flights with two layovers for the route found by users searching on KAYAK in the last 2 weeks.

No, with an average price for the route of $293, prices are generally cheapest when you fly direct.

What is the cheapest month to fly from Jacksonville to Puerto Rico?

To calculate monthly average prices, KAYAK takes all prices for each month over the last year for round-trip flights from Jacksonville to Puerto Rico, removes the top 0.1% to account for outliers, and then takes the median of all values for each month.

The cheapest month for flights from Jacksonville to Puerto Rico is June, when tickets cost $89 (return) on average. On the other hand, the most expensive months are March and October, when the average cost of round-trip tickets is $208 and $182 respectively.

What’s the cheapest day of the week to fly from Jacksonville to Puerto Rico?

The average price of all round-trip flights from Jacksonville to Puerto Rico clicked on KAYAK for each day over the last 12 months.

If your flying dates are flexible, you should consider flying to Puerto Rico on a Sunday, as we generally find the cheapest rates on that day for this route. On the other hand, Saturday is the most expensive day to fly from Jacksonville to Puerto Rico. For your return ticket, we recommend flying on a Tuesday and avoiding Wednesdays for the best deals.

How far in advance should I book a flight from Jacksonville to Puerto Rico?

To calculate weekly average prices, KAYAK takes all prices for each week before departure over the last year for round-trip flights from Jacksonville to Puerto Rico, removes the top 0.1% to account for outliers, and then takes the average of all the values for each week.

To get a below average price on the flight from Jacksonville to Puerto Rico, you should book around 2 weeks before departure, which saves you about 15% compared to booking last minute. For the absolute cheapest price, our data suggests you should book 5 weeks before departure.

Good to know

Low seasonSeptember
Cheapest flight$61
Most popular time to fly and prices are also 10% lower on average.
Flight from Jacksonville to San Juan

FAQs - booking Puerto Rico flights

  • Where can one find a prayer room at JAX?

    A meditation room is available between ticketing and the pre-security courtyard. Here you can have a prayer session before departing from the airport. Everyone can use the room regardless of their religion. This helps you socialize with people from different religious backgrounds.

  • Where can one grab a meal at JAX?

    The DoubleTree hotel is available within the airport and it has a restaurant. You can walk or take a free shuttle. Here, you can get varied types of delicacies. They are affordable to all guests regardless of the flight you have booked. You can also have a drink before departing.

  • Are there shops are SJU?

    Yes. Shops and stores are available at the airport. They are located at the main terminal. Some shops and stores include Casa, Enrique Tomas, and Dufry Shops. You can stop by to buy some things you might need during your stay at the airport.

  • Does BQN offer facilities to the disabled?

    Yes. The airport offers special assistance to travelers with physical challenges. You are free to contact the airline before your day of arrival for them to organize the necessary facilities like the wheelchair. This enables you easily access the airport on landing and move from one location to the other. If you need assistance, the airport also provides the same.

  • How does KAYAK find such low prices on flights from Jacksonville to Puerto Rico?

    KAYAK is a travel search engine. That means we look across the web to find the best prices we can find for our users. With over 2 billion flight queries processed yearly, we are able to display a variety of prices and options on flights from Jacksonville to Puerto Rico.

  • How does KAYAK's flight Price Forecast tool help me choose the right time to buy my flight ticket from Jacksonville to Puerto Rico?

    KAYAK’s flight Price Forecast tool uses historical data to determine whether the price for a flight from Jacksonville to Puerto Rico is likely to change within 7 days, so travelers know whether to wait or book now.

  • What is the Hacker Fare option on flights from Jacksonville to Puerto Rico?

    Hacker Fares allow you to combine one-way tickets in order to save you money over a traditional round-trip ticket. You could then fly from Jacksonville to Puerto Rico with an airline and back with another airline.

  • What is KAYAK's "flexible dates" feature and why should I care when looking for a flight from Jacksonville to Puerto Rico?

    Sometimes travel dates aren't set in stone. If your preferred travel dates have some wiggle room, flexible dates will show you all the options when flying from Jacksonville to Puerto Rico up to 3 days before/after your preferred dates. You can then pick the flights that suit you best.

Top tips for finding cheap flights to Puerto Rico

  • Looking for a cheap flight? 25% of our users found tickets from Jacksonville to the following destinations at these prices or less: San Juan $106 one-way - $189 round-trip
  • Jacksonville Airport (JAX) offers the best facilities to lactating mothers. It has baby care facilities. A lactating suite is near the food court. You can breastfeed your baby without any interference. A comfortable chair is available. You can pump milk for your baby before leaving the airport.
  • JAX is the most suitable for corporate travelers. There is a business center located within the airport. The spacious room is available for you to rent. It has executive chairs, board-style tables, and a computer hook-up. There is internet that allows you to connect with other partners who are not within the airport. You can also have a teleconference showing your full video.
  • JAX has lounges. Airline lounges are available for members only and at Concourse A. Military lounges are also available for US military and their families. It is located at the main terminal on the first floor. It is free of charge. You can rest as you wait for the departure time of your flight.
  • San Juan Airport (SJU) in Puerto Rico has a restaurant where you can have a meal. It is located in the Luis Munoz Marin Airport terminals. Fast food is available for the arriving travelers who are in a hurry. There is a food store where you can get all your food. They are available at a pocket-friendly price to all arriving travelers.
  • Borinquen Airport (BQN) in Puerto Rico offers car rental services to arriving travelers. Several car rental companies are located within the airport. The companies include Avis, Hertz, Sixt, Thrifty, and Budget. You can book the car online to avoid inconvenience once you arrive at the airport. This saves you the stress of looking for a means of transport to reach your destination.

Reviews of the top 5 airlines serving from Jacksonville to Puerto Rico

 
Need help choosing which airline to fly with from Jacksonville to Puerto Rico? KAYAK airline reviews give an overall score for each airline based on loads of factors, including comfort, boarding, in-flight entertainment and more, to make your decision easier. See airline scores according to verified KAYAK customer reviews.
7.9
DeltaOverall score based on 8444 reviews
7.8Comfort
8.5Crew
7.8Entertainment
7.2Food
8.1Boarding
Airline reviews

Aside from a completely packed plane, I really have no complaints.

10.0 ExcellentMark, May 2026
JAX - ATL
Read more Delta reviews

Aside from a completely packed plane, I really have no complaints.

Much better than Latam, the worse airline company ever. I hope I don't have the need to fly Latam ever in my life again.

The flight was operated by Latam. The aircraft had a technical issue and the flight was delayed for the next day. They grounded other passengers to get their airplane assigned to my flight. Most of he ground staff don't speak English (Orlando Airport), but were very polite.The crew on the other hand could speak English and Portuguese. On board service was good.

Flight was delayed it was hot while sitting on the plane, one engine was working on the plane until they had to do some jimmy rigging down the runway in order for the other engine to charge up. It was ridiculous

The flight was very good and the staff was very friendly and helpful!

Landed without a gate ready. Plane is extremely old and dirty.

All the amenities was wonderful, if they could keep their prices that low. I'd fly with them all the time.

The WiFi was horrific. I fly delta often and love their (usually reliable and free) WiFi. On this flight it was intermittent and when it did connect was extremely slow. I couldn’t get any work done while I was on the flight which was extremely frustrating. I was also in the exit row seat where there is now immediate seat in front of you, so while the leg room was nice, I couldn’t even watch the TV when the internet wasn’t working. Finally, for the last 20 mins of the flight, the announcement indicator came on the TV screens and took them over, even though no announcement was being made. Really disappointed.

Crew was great. Near on time departure and early arrival. Snacks are always meh. Not a fan of the "pay for everything including miles " proposal unless base flight rate going to be 100 bucks.

On the return flight, flight attendant Britt went out of her way to inform passengers that several of us had tight connections.

6 1/2 hours from Tampa to SFO on a Boeing 737. Cramped. No Service. No real food. One pass for coffee at the beginning and a second pass THREE hours later. And check-in in Tampa was nasty even by United standards. And I am at almost TWO million miles on United. It's a non-stop. But terrible service.

The flight had a delay but I made it to my connection. Flight was smooth overall

It's a short hop. My carryon was checked at the gate, I didn't have to drag it all over the airport. Excellent wheelchair assist.

Flights were on time actually early service was good and crew cheerful

The boarding process was straightforward. One pertinent observation regarding all boarding procedures is that if an individual requires assistance or possesses a special status and is part of preboarding, it is advisable to limit the number of passengers who can preboard with them, rather than the entire, sometimes large, companion groups. The seats are uncomfortable, and the entertainment options are significantly inferior compared to other airlines. During the snack service, I requested an additional bag of snacks, but my request was denied. Initially, the flight attendant agreed to my request.becoming a strange accurate moment. The flight duration was four hours.

Flights were on time. Free Wifi on plane. Everything was well organized.

Experience was great - no complaints. Took off on time, landed early. Got to the gate relatively quickly - took a little bit of extra time to deplane but nothing excessive.

Economy plus was so cramped I could not use my laptop. It was beyond bad.

United is one airline which regardless of how many separate United tickets in existence, if one flight breaks down, the airline will take care of all the flights.

Everything was on time and service on the flight was great!

Flight was quick, less time than expected, and the attendants all friendly and helpful. We had paid extra for more leg room and were very comfortable. Haven't flown JetBlue in quite a while. Glad to be back!

JetBlue not only has the most comfortable planes, but also used to have the best customer service. Lorie Wright, the lady at the gate was very rude not only to me, but to other passengers as well. Her colleague, the gentleman was also not very friendly. They both were acting like they were doing passengers a favor. The crew on board was very nice.

Direct tv did not work on flight Short flight so no good service offered Arrived early to destination and had to wait for gate to open. Deplaned LATER than if we arrived on time!! Poor planning Jet blue has had something go wrong on every flight I’ve taken with them in last five years. Terribly run airline

My experience with JetBlue was fine BUT I am very upset with Kayak! JetBlue had delayed our scheduled departure by an hour and you NEVER notified me of the change. I did not hear directly from JetBlue because the trip was booked through Kayak, a mistake I will not repeat. Your reminder of the our trip last week still had the WRONG departure time. Our return trip has also changed, and again no notice from you.

Not having an assigned seat until boarding and then having to check my bag.

I purchased ticket so our daughter ( a minor) can sit next to her mother. No help at gate after kayak insisted that this could be done. She ended sitting by herself

Terrible. There was a lot of misleading information regarding ticketing, seat upgrades, & boarding group. I also expect my seat will recline. I have back problems & it is very painful for me of the seat doesn’t recline. In addition, when I choose a fare that allows me a carry-on bag, I expect to be able to carry it on. Not be forced to check it. Thos happened on my flight to MCO & back to Boston. Not sure I will ever fly JetBlue again. Further I bought the ticket through hat deal. I will NEVER do that again. They were incapable of providing an accurate record locator # for either leg of the trip. I had to call them before each flight with me VERY stressed about whether I would actually be able to get on my flight. Who does that? Who books flight & then FAILS to give an accurate record locator? Twice!

The flight was delayed 4 hours and the JetBlue people at the counter kept lying to us and telling us it was due to weather however all other flights were going in and out of NY and FL. Then they lied that the plane had to stop to refuel. Then they lied and said the plane needed a tire change. JetBlue is the worst. Then they gave a lot of people meal vouchers however I didn’t know they did that and they didn’t offer anything to me.

Jet Blue has excellent everything, Friendly customer service and staff, clean aircraft’s and is always on time.

I was traveling with two small kids and our TV s were the only ones not working. Informed the flight attendant who did nothing about them.

Requested early boarding to disinfect seat, tray table, etc. before general boarding. Instructed to board after wheelchair passengers. Waited on jet bridge behind 12 wheelchair passengers. Stopped immediately after entering plane to wait for gate agent in rear of plane cleaning a seat that was wet, got to my row and found both seats adjacent to mine already occupied, with the lack of room making it impossible for me to clean my own space and defeating the purpose of my boarding early. Cleaned the armrests and tray table as best I could.

We had several flights and they were all on-time and flawless

For a 4 1/2 hour international flight all we got was 1 small pack of cookies and a drink. You had to watch movies on your own devise.

The seats need better cushioning for a nearly 5-hour flight, it was a bit uncomfortable. I'm glad American has free wi-fi but there were was a bout 30 minutes in the middle of the flight when there was no connection which was frustrating.

My original flight got delayed day of so I had to rebook it from one layover to two layovers. The flight also left earlier which was a slight inconvenience but manageable. Then my first connection flight got delayed 3 separate times for a total of 2 hours delayed, causing me to miss my second connection flight back to Santa Barbara. Now, because of this missed flight, I am missing my college classes that I pay for.

Flight: Started on time. Comfortable flight. Arrived on time. Crew: Very cordial and helpful. Drinks and snack was served with a smile. Overall enjoyed the trip. Regards, Hari Doss Chanchala Doss

I’m sure Business Class would be excellent. I feel like I got what I paid for. Overall it was good and well worth it. I would do it again.

This short sector between Miami and JFK was undertaken purely for business purposes, with efficiency as the primary objective rather than a full inflight experience. Overall, the journey met its intended purpose; however, the ground experience at Miami stood out significantly. During check-in, I was unable to link my frequent flyer details from Qatar Airways (oneworld alliance) through either the self-service kiosk or web check-in. The situation was handled exceptionally well by the check-in agent, who demonstrated remarkable ownership. She coordinated across multiple counters, ensured my frequent flyer number was correctly reflected, reissued the boarding pass, and confirmed that mileage accrual would be recognized. Additionally, she ensured the boarding pass reflected priority status, enabling a seamless priority check-in experience without delays. This level of proactive service was both commendable and impactful. Boarding and the inflight experience, operated by American Airlines under a codeshare arrangement, were efficient but largely transactional. While operational delivery was smooth, there was no visible recognition of oneworld frequent flyer status onboard. In comparison to the consistently personalized engagement typically experienced with Qatar Airways, this absence was noticeable—though understandably a potential limitation of codeshare alignment rather than a direct service shortfall. In summary, while the flight itself fulfilled its operational intent, the exceptional professionalism and commitment demonstrated at the Miami check-in counter was the defining highlight of this journey. Greater consistency in elite recognition across partner airlines would further enhance the overall experience.

Business class was very good, one of my best flights

Incredibly delayed. First delay was due to plane coming in being late. Resulted in 30 minute delay. Boarded and then had multiple mechanical issues. Was on plane for an hour until they told people they could get off if they wanted but couldn't come back. Then gate agent rushed in and said they had lost control of who went off and we would all have to deplane and then get back on. They said flight had not been cancelled. Then while sitting waiting to board again they announced it would take two hours to get new plane and to wait at new gate. New plane arrived, reboarded only to find out that pilots had timed out. Waited for new pilots. In that time one of the flight attendants timed out. Never received food or water while waiting. Was confusing mess as to what was happening. Even flight attendants and gate agents were getting frustrated. Almost 6 hours delayed. Called American to received flight credit but can't get anywhere as Kayak reservation and don't have a ticket number. Reached out to Kayak but never heard back.

It was an early flight and most people napped/slept and the crew let us which was nice.

First of all we hade waited 3 hours in the airplane waiting to leave. Second the return schedule was changed and it messed up my entire vaction. I won't buy never again another flight and recommend to nobody traveling with them.

It didn’t happen. I booked it and then was told it wasn’t available and then forced to pay far higher prices for a worse option

This company socks. It's fraud. They canceled our flight yesterday, and today we were late because of a really long line at the check in bag. At the rebook station, there was ton of people. The workers were all rude. I am gonna make a report to FTC.

Flight got delayed for 5 hours no good explanation was offered ;(

There was no one at the counter to assist with our check in. The app didn’t work, so I arrived at the airport with time to check in and I couldn’t because no employees were there. When I finally got someone on the phone, it was inside the 60min rule and they said I could no longer check in and they could sell me another ticket. We had to scramble and pay an additional $800 for tickets and THEN AFTER (about 60 min from my original convo with customer service and 10min after original departure time) I had boarded my new flight, there was email saying my original flight from Frontier was delayed and leaving 2hr 50min later, but I STILL wouldn’t have been able to check in. Which means customer service should have been able to see it and let me check in because I was well within my check in time. When I call Frontier, they hang up on me. So their app didn’t work and they employees left and they take zero responsibility or assistance with their “customer service”

Everyone seemed to be in zone 1 for boarding. Maybe break it up a little. Otherwise, smooth flight.

The experience was good. No frills but I got there safe and sound and on time.

After boarding and un-boarding twice over 6+hours, the flight was canceled.

Severe turbulence. Captain never came on to reassure passengers after things settled down.

Everything you need to know for your flight from Jacksonville to Puerto Rico

Information on your arrival and departure airports