Which airports can I use when flying from Missoula to Juneau?

Flights from Missoula to Juneau usually depart from Missoula Johnson-Bell Field (MSO) and arrive at Juneau Intl (JNU).

Which airports do connecting flights from Missoula to Juneau pass through?

Most connecting flights from Missoula to Juneau pass through Seattle/Tacoma Intl (SEA), which handles 100% of one-stop traffic on this route.

Can I save money by using flexible dates for flights from Missoula to Juneau?

Yes. Flexible dates can save you up to 46% on flights from Missoula to Juneau. Friday is the cheapest departure day at $454 round-trip on average, while Sunday is the most expensive at $833, a difference of $379. KAYAK's flexible dates feature shows options up to 3 days before and after your selected dates, making it easier to compare nearby fares.

Do I need a passport to fly from Missoula to Juneau?

No, a passport is not required for this domestic route, but you will need a real ID-compliant driver's license, a state ID or another TSA-accepted form of identification.

Have flight prices from Missoula to Juneau changed much recently?

Yes. Based on fares seen in the past 5 days, round-trip prices on this route varied from about $892 to $1,053. That means the highest observed fare was about 18% higher than the lowest one.

What is the time difference between Missoula and Juneau?

Juneau is 2 hours behind Missoula (Alaska Time vs Mountain Time). Plan for the time shift when scheduling connections or first-day activities.

What car rental options are available at Juneau Intl Airport (JNU)?

Juneau Intl Airport (JNU) hosts 5 major car rental companies, with daily rates averaging $115 for economy cars. Top options include: • Budget • Avis • Hertz • Alamo • Enterprise Rent-A-Car

How much is a round-trip flight from Missoula to Juneau?

Round-trip flights from Missoula to Juneau typically range from $568 to $674. The lowest price found in the past 5 days was $892, on Alaska Airlines.

Which airline is the cheapest to fly from Missoula to Juneau?

Alaska Airlines ($892) offered the cheapest round-trip ticket from Missoula to Juneau in the last 5 days.

What is the cheapest layover airport when flying from Missoula to Juneau?

Flights via Seattle/Tacoma Intl (SEA) offer the most affordable fares, with an average round-trip price of $601. Based on KAYAK data over the past 3 months.

When flying from Missoula to Juneau which airport offers the shortest layover?

Seattle/Tacoma Intl (SEA) had the shortest average connection time for Missoula to Juneau layovers at 4h 08m over the past 3 months.

$892 CHEAP FLIGHTS from Missoula to Juneau (MSO - JNU)

Save 25% or more on flights. Compare deals from all over the web.

Never overpay with our price tracking tools.

Filter searches by price, airline and more to find your best flights.

Cheapest round-trip

$892

Typical prices: $568-$674

Alaska Airlines

Sun 1/7Thu 1/11

MSO - JNU • 2 stops

Start a new search

KAYAK searches 100s of sites at once to find you the best travel deals.

We hope you love your trip to Juneau!

Flight Deals

Cheap Flights from Missoula to Juneau (MSO-JNU)

Discover the best prices for you by selecting your travel dates on KAYAK.

Round-trip

One-way

Recent round-trip flight deals from Missoula to Juneau

Thu, Jan 7 - Mon, Jan 11

2:02 pm - 6:46 amMSO Missoula Johnson-Bell Field-JNU Juneau Intl

18h 44m3 stops Seattle/Tacoma Intl Ketchikan Sitka

9:40 am - 3:32 pmJNU Juneau Intl-MSO Missoula Johnson-Bell Field

27h 52m3 stops Sitka Ketchikan Seattle/Tacoma Intl

$892Alaska Airlines

Thu, Jan 7 - Mon, Jan 11

2:02 pm - 9:36 pmMSO Missoula Johnson-Bell Field-JNU Juneau Intl

9h 34m1 stop Seattle/Tacoma Intl

7:16 am - 9:24 pmJNU Juneau Intl-MSO Missoula Johnson-Bell Field

12h 08m2 stops Ketchikan Seattle/Tacoma Intl

$897Alaska Airlines

Thu, Jan 7 - Mon, Jan 11

4:22 pm - 9:36 pmMSO Missoula Johnson-Bell Field-JNU Juneau Intl

7h 14m1 stop Seattle/Tacoma Intl

7:00 am - 9:24 pmJNU Juneau Intl-MSO Missoula Johnson-Bell Field

12h 24m1 stop Seattle/Tacoma Intl

$902Alaska Airlines

Thu, Jan 7 - Mon, Jan 11

7:41 am - 1:04 pmMSO Missoula Johnson-Bell Field-JNU Juneau Intl

7h 23m1 stop Seattle/Tacoma Intl

6:33 pm - 12:22 pmJNU Juneau Intl-MSO Missoula Johnson-Bell Field

15h 49m1 stop Seattle/Tacoma Intl

$911Alaska Airlines

Thu, Jan 7 - Mon, Jan 11

2:02 pm - 6:46 amMSO Missoula Johnson-Bell Field-JNU Juneau Intl

18h 44m3 stops Seattle/Tacoma Intl Ketchikan Sitka

6:33 pm - 12:22 pmJNU Juneau Intl-MSO Missoula Johnson-Bell Field

15h 49m1 stop Seattle/Tacoma Intl

$912Alaska Airlines

Thu, Jan 7 - Mon, Jan 11

2:02 pm - 9:30 pmMSO Missoula Johnson-Bell Field-JNU Juneau Intl

9h 28m2 stops Seattle/Tacoma Intl Ketchikan

9:40 am - 9:24 pmJNU Juneau Intl-MSO Missoula Johnson-Bell Field

9h 44m3 stops Sitka Ketchikan Seattle/Tacoma Intl

$924Alaska Airlines

Thu, Jan 7 - Mon, Jan 11

7:41 am - 8:16 pmMSO Missoula Johnson-Bell Field-JNU Juneau Intl

14h 35m3 stops Seattle/Tacoma Intl Ketchikan Sitka

9:40 am - 9:24 pmJNU Juneau Intl-MSO Missoula Johnson-Bell Field

9h 44m3 stops Sitka Ketchikan Seattle/Tacoma Intl

$930Alaska Airlines

Thu, Jan 7 - Mon, Jan 11

7:41 am - 8:16 pmMSO Missoula Johnson-Bell Field-JNU Juneau Intl

14h 35m3 stops Seattle/Tacoma Intl Ketchikan Sitka

9:40 am - 9:24 pmJNU Juneau Intl-MSO Missoula Johnson-Bell Field

9h 44m3 stops Sitka Ketchikan Seattle/Tacoma Intl

$977Alaska Airlines

Fri, Nov 13 - Tue, Nov 17

7:03 am - 8:09 pmMSO Missoula Johnson-Bell Field-JNU Juneau Intl

15h 06m1 stop Seattle/Tacoma Intl

7:14 am - 9:18 pmJNU Juneau Intl-MSO Missoula Johnson-Bell Field

12h 04m2 stops Ketchikan Seattle/Tacoma Intl

$1,050Alaska Airlines

Fri, Nov 13 - Tue, Nov 17

4:21 pm - 9:28 pmMSO Missoula Johnson-Bell Field-JNU Juneau Intl

31h 07m2 stops Seattle/Tacoma Intl Ketchikan

7:14 am - 9:18 pmJNU Juneau Intl-MSO Missoula Johnson-Bell Field

12h 04m2 stops Ketchikan Seattle/Tacoma Intl

$1,053Alaska Airlines

Booking Insights

Price, demand and travel trends for Missoula to Juneau flights

Use KAYAK data on prices, travel dates, airlines and seasonal trends to compare options and book flights with more confidence.

Prices

Airlines

Layovers

How much is a round-trip flight from Missoula to Juneau? This analysis is based on the cheapest round-trip price found on KAYAK in the last 12 months by searching for a flight from Missoula to Juneau departing in january.

Find deals

Cheapest flight	$892

Round-trip flight from Missoula to Juneau

When to book flights from Missoula to Juneau

Are your dates flexible? Find out the best times to travel from Missoula to Juneau based on our flight data from the last year. Discover the cheapest month and even day to fly.

Estimated round-trip price

KAYAK looks at all historical flight data for each date to provide a predicted price for one-way trips or round-trips with a duration up to 40 days. While we try to provide actual minimum prices for each date, some prices are predictions and actual prices may differ.

Do I need a passport to fly from Missoula to Juneau?
No, a passport is not required for this domestic route, but you will need a real ID-compliant driver's license, a state ID or another TSA-accepted form of identification.
Have flight prices from Missoula to Juneau changed much recently?
Yes. Based on fares seen in the past 5 days, round-trip prices on this route varied from about $892 to $1,053. That means the highest observed fare was about 18% higher than the lowest one.
What car rental options are available at Juneau Intl Airport (JNU)?
Juneau Intl Airport (JNU) hosts 5 major car rental companies, with daily rates averaging $115 for economy cars. Top options include:

• Budget
• Avis
• Hertz
• Alamo
• Enterprise Rent-A-Car
Which airports can I use when flying from Missoula to Juneau?
Flights from Missoula to Juneau usually depart from Missoula Johnson-Bell Field (MSO) and arrive at Juneau Intl (JNU).
Which airports do connecting flights from Missoula to Juneau pass through?
Most connecting flights from Missoula to Juneau pass through Seattle/Tacoma Intl (SEA), which handles 100% of one-stop traffic on this route.
Can I save money by using flexible dates for flights from Missoula to Juneau?
Yes. Flexible dates can save you up to 46% on flights from Missoula to Juneau. Friday is the cheapest departure day at $454 round-trip on average, while Sunday is the most expensive at $833, a difference of $379.

KAYAK's flexible dates feature shows options up to 3 days before and after your selected dates, making it easier to compare nearby fares.
What is the time difference between Missoula and Juneau?
Juneau is 2 hours behind Missoula (Alaska Time vs Mountain Time). Plan for the time shift when scheduling connections or first-day activities.

If your dates are flexible, aim for a Friday departure and avoid flying on Sunday. On this route, Friday flights average $454, about $379 less than Sunday fares (45% savings) based on the last 12 months.
If you're arriving late at night and need somewhere to stay, check out these hotels close to Juneau Intl Airport.

• Travelodge by Wyndham Juneau
• Frontier Suites Hotel in Juneau
• Aspen Suites Hotel Juneau

More options for your flight from Missoula to Juneau

Add a hotel or car rental

Airports

Cabin class

Direct Flights

Origins

Other destinations

Complete your trip to Juneau with a hotel stay or car rental

Car rentals in Juneau

Hotels in Juneau

Vacations in Juneau

MSO - JNU

$892 Find Cheap Flights from Missoula to Juneau - Compare and Save

Everything you should know

Cheap Flights from Missoula to Juneau (MSO-JNU)

Recent round-trip flight deals from Missoula to Juneau

Recent one-way flight deals from Missoula to Juneau

Price, demand and travel trends for Missoula to Juneau flights

How much is a round-trip flight from Missoula to Juneau?

Which airline is the cheapest to fly from Missoula to Juneau?

What is the cheapest layover airport when flying from Missoula to Juneau?

When flying from Missoula to Juneau which airport offers the shortest layover?

Key details for Missoula to Juneau flights

Cheapest flight

When to book flights from Missoula to Juneau

Your Missoula to Juneau flight questions, answered

Your guide to booking Missoula to Juneau flights

More options for your flight from Missoula to Juneau

Complete your trip to Juneau with a hotel stay or car rental

Information on your arrival and departure airports

Cabin class types available on flights from Missoula to Juneau

Find direct flights to and from Missoula and Juneau

Flights from domestic origins to Juneau

Flights to other popular destinations