MSO - JNU

$832 Find Cheap Flights from Missoula to Juneau - Compare and Save

1 adult
1 adult, Economy, 0 bags

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Everything you should know

Cheapest round-trip
$832
Typical prices: $568-$674
Alaska Airlines
Sun 1/7Thu 1/11
MSO - JNU • 1 stop
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Flight Deals

Cheap Flights from Missoula to Juneau (MSO-JNU)

 
Discover the best prices for you by selecting your travel dates on KAYAK.

Recent round-trip flight deals from Missoula to Juneau

Thu, Jan 7 - Mon, Jan 11
Alaska Airlines Logo
4:22 pm - 12:28 amMSO  Missoula Johnson-Bell Field-JNU Juneau Intl
10h 06m1 stop Seattle/Tacoma Intl
Alaska Airlines Logo
6:33 pm - 12:22 pmJNU  Juneau Intl-MSO Missoula Johnson-Bell Field
15h 49m1 stop Seattle/Tacoma Intl
$832Alaska Airlines
Thu, Jan 7 - Mon, Jan 11
Alaska Airlines Logo
2:02 pm - 9:30 pmMSO  Missoula Johnson-Bell Field-JNU Juneau Intl
9h 28m2 stops Seattle/Tacoma Intl Ketchikan
Alaska Airlines Logo
6:33 pm - 12:22 pmJNU  Juneau Intl-MSO Missoula Johnson-Bell Field
15h 49m1 stop Seattle/Tacoma Intl
$840Alaska Airlines
Thu, Jan 7 - Mon, Jan 11
Alaska Airlines Logo
2:02 pm - 6:46 amMSO  Missoula Johnson-Bell Field-JNU Juneau Intl
18h 44m3 stops Seattle/Tacoma Intl Ketchikan Sitka
Alaska Airlines Logo
6:33 pm - 12:22 pmJNU  Juneau Intl-MSO Missoula Johnson-Bell Field
15h 49m1 stop Seattle/Tacoma Intl
$850Alaska Airlines
Thu, Jan 7 - Mon, Jan 11
Alaska Airlines Logo
4:22 pm - 12:28 amMSO  Missoula Johnson-Bell Field-JNU Juneau Intl
10h 06m1 stop Seattle/Tacoma Intl
Alaska Airlines Logo
6:33 pm - 12:22 pmJNU  Juneau Intl-MSO Missoula Johnson-Bell Field
15h 49m1 stop Seattle/Tacoma Intl
$851Alaska Airlines
Thu, Jan 7 - Mon, Jan 11
Alaska Airlines Logo
2:02 pm - 9:30 pmMSO  Missoula Johnson-Bell Field-JNU Juneau Intl
9h 28m2 stops Seattle/Tacoma Intl Ketchikan
Alaska Airlines Logo
9:40 am - 10:58 pmJNU  Juneau Intl-MSO Missoula Johnson-Bell Field
35h 18m3 stops Sitka Ketchikan Seattle/Tacoma Intl
$854Alaska Airlines
Thu, Jan 7 - Mon, Jan 11
Alaska Airlines Logo
2:02 pm - 8:16 pmMSO  Missoula Johnson-Bell Field-JNU Juneau Intl
8h 14m3 stops Seattle/Tacoma Intl Ketchikan Sitka
Alaska Airlines Logo
7:15 am - 3:32 pmJNU  Juneau Intl-MSO Missoula Johnson-Bell Field
6h 17m2 stops Ketchikan Seattle/Tacoma Intl
$866Alaska Airlines
Thu, Jan 7 - Mon, Jan 11
Alaska Airlines Logo
2:02 pm - 8:16 pmMSO  Missoula Johnson-Bell Field-JNU Juneau Intl
8h 14m3 stops Seattle/Tacoma Intl Ketchikan Sitka
Alaska Airlines Logo
9:40 am - 10:58 pmJNU  Juneau Intl-MSO Missoula Johnson-Bell Field
11h 18m3 stops Sitka Ketchikan Seattle/Tacoma Intl
$1,032Alaska Airlines
Booking Insights

Price, demand and travel trends for Missoula to Juneau flights

Use KAYAK data on prices, travel dates, airlines and seasonal trends to compare options and book flights from Missoula to Juneau with more confidence.

How much is a round-trip flight from Missoula to Juneau?

Round-trip flights from Missoula to Juneau start at $832. Prices are above average for this route right now, with typical round-trip fares ranging from $568 to $674. The lowest price found in the past 5 days was $832 on Alaska Airlines.

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When to book flights from Missoula to Juneau

Are your dates flexible? Find out the best times to travel from Missoula to Juneau based on our flight data from the last year. Discover the cheapest month and even day to fly.
Estimated round-trip price

Your Missoula to Juneau flight questions, answered

Find helpful route details based on KAYAK data, including flight times, airports, airlines and booking questions.

  • Which airports can I use when flying from Missoula to Juneau?

    Flights from Missoula to Juneau usually depart from Missoula Johnson-Bell Field (MSO) and arrive at Juneau Intl (JNU).

  • Which airports do connecting flights from Missoula to Juneau pass through?

    Most connecting flights from Missoula to Juneau pass through Seattle/Tacoma Intl (SEA), which handles 100% of one-stop traffic on this route. Other layover airports each see under 5%.

  • Can I save money by using flexible dates for flights from Missoula to Juneau?

    Yes. Being flexible with your travel dates can save you up to 46% on the Missoula to Juneau route. Friday is the cheapest departure day at $454 round-trip on average, while Sunday is the most expensive at $833, a difference of $379. KAYAK's flexible dates feature shows options up to 3 days before and after your selected dates, making it easier to compare nearby fares.

  • Do I need a passport to fly from Missoula to Juneau?

    No, a passport is not required for this domestic route, but you will need a real ID-compliant driver's license, a state ID, or another TSA-accepted form of identification.

  • Have flight prices from Missoula to Juneau changed much recently?

    Yes. Based on fares seen in the past 5 days, round-trip prices on this route varied from about $832 to $1,032. That means the highest observed fare was about 24% higher than the lowest one.

  • What is the time difference between Missoula and Juneau?

    Juneau is 2 hours behind Missoula (Alaska Time vs Mountain Time). Plan for the time shift when scheduling connections or first-day activities.

  • What car rental options are available at Juneau Intl Airport (JNU)?

    Juneau Intl Airport (JNU) hosts 5 major car rental companies, with daily rates starting from around $36 for economy cars. Top options include:
    • Budget
    • Avis
    • Alamo
    • Hertz
    • Enterprise Rent-A-Car

Your guide to booking Missoula to Juneau flights

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