$136 Find Cheap Flights from San Diego to Puerto Rico

This is the cheapest one-way flight price found by a KAYAK user in the last 72 hours by searching for a flight from San Diego to Puerto Rico departing on 4/27. Fares are subject to change and may not be available on all flights or dates of travel. Click the price to replicate the search for this deal.
1 adult
1 adult, Economy, 0 bags

KAYAK searches hundreds of travel sites at once for deals on flights to Puerto Rico

Travelers love KAYAK
41,299,237 searches in the past 7 days on KAYAK

Save 23% or moreCompare multiple travel sites with one search.

Track pricesNot ready to book? Create a price alert for when prices drop.

Bundle and saveSave money when you bundle your flight + hotel.

Filter your dealsChoose cabin class, free Wi-Fi and more.

Flight Deals
Booking Insights
Flight Deals

Book Cheap San Diego to Puerto Rico Plane Tickets

 
Here are some of the best deals found on KAYAK recently from the most popular airlines for round-trip flights from San Diego to Puerto Rico that are departing in the next months. While these flights were available on KAYAK in the last 72 hours, prices and availability are subject to change and deals may expire.
Discover the best prices for you by selecting your travel dates on KAYAK.

Recent round-trip flight deals from San Diego to Puerto Rico

вт, квіт. 21 - вт, трав. 12
American Airlines Logo
6:40 am - 8:51 pm
SAN
-
SJU
11h 11m
1 stop
American Airlines Logo
5:45 am - 2:05 pm
SJU
-
SAN
11h 20m
2 stops
$358American Airlines
ср, серп. 19 - пн, серп. 24
American Airlines Logo
6:20 am - 11:41 pm
SAN
-
SJU
14h 21m
1 stop
American Airlines Logo
10:32 am - 9:48 pm
SJU
-
SAN
14h 16m
1 stop
$370American Airlines
пт, квіт. 17 - сб, квіт. 25
United Airlines Logo
7:20 am - 11:50 pm
SAN
-
SJU
13h 30m
1 stop
United Airlines Logo
7:00 am - 1:51 pm
SJU
-
SAN
9h 51m
1 stop
$371United Airlines
пт, квіт. 24 - пт, трав. 1
Southwest Logo
10:20 am - 11:55 pm
SAN
-
SJU
10h 35m
2 stops
Southwest Logo
5:35 am - 7:00 pm
SJU
-
SAN
16h 25m
1 stop
$372Southwest
пн, трав. 11 - вт, трав. 19
Delta Logo
10:15 pm - 1:11 pm
SAN
-
SJU
11h 56m
1 stop
Delta Logo
2:25 pm - 10:00 pm
SJU
-
SAN
10h 35m
1 stop
$375Delta
нд, трав. 3 - нд, трав. 10
American Airlines Logo
10:40 pm - 2:20 pm
SAN
-
SJU
12h 40m
1 stop
American Airlines Logo
11:59 pm - 8:15 am
SJU
-
SAN
11h 16m
1 stop
$378American Airlines
сб, трав. 9 - пт, трав. 15
JetBlue Logo
9:15 pm - 10:18 am
SAN
-
SJU
10h 03m
1 stop
JetBlue Logo
5:01 am - 2:02 pm
SJU
-
SAN
12h 01m
1 stop
$380JetBlue
ср, квіт. 15 - нд, квіт. 19
Multiple Airlines Logo
10:30 am - 7:14 pm
SAN
-
SJU
29h 44m
2 stops
Multiple Airlines Logo
5:45 am - 12:11 am
SJU
-
SAN
21h 26m
1 stop
$381Multiple Airlines
пн, трав. 4 - пт, трав. 8
United Airlines Logo
6:05 pm - 12:04 pm
SAN
-
SJU
14h 59m
2 stops
United Airlines Logo
7:00 am - 1:50 pm
SJU
-
SAN
9h 50m
1 stop
$382United Airlines
ср, квіт. 15 - нд, квіт. 19
Multiple Airlines Logo
10:30 am - 7:14 pm
SAN
-
SJU
29h 44m
2 stops
Multiple Airlines Logo
5:45 am - 12:11 am
SJU
-
SAN
21h 26m
1 stop
$383Multiple Airlines
Booking Insights

KAYAK's insights & trends for San Diego to Puerto Rico flights

Get data-powered insights and trends into flights from San Diego to Puerto Rico to help you find the cheapest flights, the best time to fly and much more.

What is the cheapest San Diego to Puerto Rico flight route?

Data is based on round-trip flight searches on KAYAK over the past month.

The cheapest ticket to Puerto Rico from San Diego found in the last 72 hours was to San Juan, at $380 round-trip. The most popular route is from San Diego (SAN) to San Juan Luis Munoz Marin Intl Airport (SJU), and the cheapest round-trip airline ticket found on this route in the last 72 hours was $380.

What is the cheapest month to fly from San Diego to Puerto Rico?

To calculate monthly average prices, KAYAK takes all prices for each month over the last year for round-trip flights from San Diego to Puerto Rico, removes the top 0.1% to account for outliers, and then takes the median of all values for each month.

The cheapest month for flights from San Diego to Puerto Rico is October, when tickets cost $418 (return) on average. On the other hand, the most expensive months are December and June, when the average cost of round-trip tickets is $688 and $585 respectively.

How far in advance should I book a flight from San Diego to Puerto Rico?

To calculate weekly average prices, KAYAK takes all prices for each week before departure over the last year for round-trip flights from San Diego to Puerto Rico, removes the top 0.1% to account for outliers, and then takes the average of all the values for each week.

To get a below average price on the flight from San Diego to Puerto Rico, you should book around 4 weeks before departure, which saves you about 27% compared to booking last minute. For the absolute cheapest price, our data suggests you should book 26 weeks before departure.

Good to know

Low seasonFebruary
Cheapest flight$136
Best time to beat the crowds but there is an average 4% increase in price.
Most popular time to fly with an average 17% increase in price.
Flight from San Diego to San Juan

FAQs - booking Puerto Rico flights

  • What type of travel documents will I need to travel to Puerto Rico?

    Because Puerto Rico is a United States territory, there is no need to take either a passport or a visa with you to travel to this location. It is important to remember that you will need proper identification to travel to Puerto Rico just as you would any other state in the United States.

  • If I plan on renting a car when I arrive in Puerto Rico, what child car seat laws should I be aware of?

    In Puerto Rico, every child under the age of four needs to travel in a child safety seat. For any children that are between the ages of four and eight years old or less than 57 inches tall, they must travel in a booster seat. All children that are 12 years old or younger need to travel in the rear of the vehicle.

  • If I am flying to San Juan Luis Munoz Marin International Airport, are there any easily accessible public transportation choices to get me from the airport to downtown San Juan?

    One of the most convenient ways to get from the airport to downtown is aboard the line D53 bus that makes trips from the airport to both Old San Juan as well as the convention center in the center of San Juan.

  • If I want to travel to the small island of Vieques on the eastern side of Puerto Rico, what is the best airport choice in Puerto Rico for me to get there?

    Your best choice is to take one of the many flights available to the San Juan Luis Munoz Marin International Airport. From there, you can travel aboard Cape Air by plane, or you can utilize the Puerto Rico Ferry service that makes the trip from the Ceiba Harbor to the island in around 1h.

  • How does KAYAK find such low prices on flights from San Diego to Puerto Rico?

    KAYAK is a travel search engine. That means we look across the web to find the best prices we can find for our users. With over 2 billion flight queries processed yearly, we are able to display a variety of prices and options on flights from San Diego to Puerto Rico.

  • How does KAYAK's flight Price Forecast tool help me choose the right time to buy my flight ticket from San Diego to Puerto Rico?

    KAYAK’s flight Price Forecast tool uses historical data to determine whether the price for a flight from San Diego to Puerto Rico is likely to change within 7 days, so travelers know whether to wait or book now.

  • What is the Hacker Fare option on flights from San Diego to Puerto Rico?

    Hacker Fares allow you to combine one-way tickets in order to save you money over a traditional round-trip ticket. You could then fly from San Diego to Puerto Rico with an airline and back with another airline.

  • What is KAYAK's "flexible dates" feature and why should I care when looking for a flight from San Diego to Puerto Rico?

    Sometimes travel dates aren't set in stone. If your preferred travel dates have some wiggle room, flexible dates will show you all the options when flying from San Diego to Puerto Rico up to 3 days before/after your preferred dates. You can then pick the flights that suit you best.

Top tips for finding cheap flights to Puerto Rico

  • A very popular destination for passengers traveling from San Diego to Puerto Rico is to fly to the San Juan Luis Munoz Marin International Airport (SJU). On this route, you'll find one-stop service aboard United Airlines, American Airlines, and JetBlue.
  • For passengers looking for a cheaper alternative to make the trip from San Diego (SAN) to the San Juan Luis Munoz Marin International Airport, consider the two-stop flights offered by both Spirit Airlines and Frontier Airlines that offer substantially lower fares than the one-stop offerings.
  • If you are looking for a public transportation alternative for getting to the San Diego International Airport, the Metropolitan Transit System's route 992 makes stops at both of the terminal buildings at the airport, offering service from downtown San Diego.
  • For travelers looking for a comfortable place to wait for their flight at the San Diego International Airport before their trip to Puerto Rico, one of the best choices is the Aspire Lounge inside terminal 2 at the airport. There is also a United Airlines United club and a Delta Airlines Sky Club at this airport.
  • If you are going to be traveling from San Diego to the Ponce Airport (PSE) in Puerto Rico, you will find a one-stop flight aboard a combination of Alaska Airlines and Spirit Airlines with a layover at Orlando Airport (MCO).

Reviews of the top 5 airlines serving from San Diego to Puerto Rico

 
Need help choosing which airline to fly with from San Diego to Puerto Rico? KAYAK airline reviews give an overall score for each airline based on loads of factors, including comfort, boarding, in-flight entertainment and more, to make your decision easier. See airline scores according to verified KAYAK customer reviews.
8.0
Alaska AirlinesOverall score based on 12014 reviews
8.5Crew
7.1Food
8.1Boarding
7.0Entertainment
7.8Comfort
Airline reviews

Good as usual. Just wished my seat was assigned at online check in. Thanks anyways

8.0 ExcellentAnonymous, Mar 2026
SAN - MRY
Read more Alaska Airlines reviews

Good as usual. Just wished my seat was assigned at online check in. Thanks anyways

This was my first trip with Alaska Airlines (round trip DCA to San Diego). Despite a slight delay on the return flight, I feel compelled to post a RAVE review! I cannot praise the airline and the crew enough! Everyone was kind, professional, and courteous, every step of the way- excellent service, snacks, and entertainment! On both legs of the trip I inquired whether there were any free seating upgrades and my request were granted BOTH times! I’ve flown on other airlines where they won’t do that, even when those premium seats are empty. As a customer service professional myself, I can say I left my experience feeling like a valued customer and not just a number. I NEVER expected to praise an airline lol I’ll definitely go out of my way to fly with Alaska on future trips. Thank you for such an awesome experience!

I bought tickets MONTHS ago for a flight that left SAN at 14:30. That is what it says on our tickets. I was never notified of any time changes. During online check-in. I discovered the flight time had been changed to 15:45. This was unacceptable and had I been notified, I would have changed flights, or airlines. That departure time was unworkable with our plans. We called Alaska and asked for an explanation. They said flight time was changed 11/08/25. No proof of notification could be offered. We asked to be moved to an earlier flight. After much pleading, the rep said she would allow a “one time exception..” While I appreciate being moved, this was YOUR fault Alaska Airlines.

The room for legs is adequate for a 6’ tall man and the flight was comfortable. The cabin is clean and the crew is very friendly and pleasant.

Worst first/business class I have ever flown after 75 years on planes. Barely acceptable seats, terrible food, uninterested attendants, unavailable WiFi. I’ll never fly this airline again.

Again, very smooth and all of the Alaska folks were great. They continue to meet all my needs.

The whole experience went smoothly with no hitches along the way.

My Alaska Airlines return flight, although worked out in the end, didn't start off well. The initial plane that my family and I boarded was grounded because of a mishap that happened to one of the engines and everyone on board had to disembark the plane. Thankfully we were accommodated with a another plane but our initial flight was supposed to have departed at 11 pm San Diego time for Orlando but instead we ended up leaving at 1:40 am San Diego time. All Passengers were informed that part of the delay was that the plane had to be inspected by the captain, the food had to be stocked and the individuals responsible for fueling the plane left for the evening and had to be summoned to return to fill up our. The Alaska Airlines crew at the airport and on the plane were awesome and apologetic. I know that the crew wasn't responsible for the mishap of the engine but I think in the future the airline should offer a complimentary drink or (1) item of food other than pretzels, nuts or chips to all passengers since we're not to blame for the extreme set backs. The airline in general is good and I recommend to all flyers.

Late leaving so threatened our connection in Vegas to Seattle. We did make up time and made our connection.

Dropping off of the checked bags took way longer than it should have. The agent for the pre-tagged and ready to drop off line was gone and didn't come back for about 15 minutes. The other bag check lines were barely moving. Agents were standing around and not much was getting done. Everything else about the flight was great.

The problem with the seat assignments is that there were a lot of rows in the front that were empty but my row at the back was full. Just not so pleasant.

Good but I prefer choose your own seat. With the new assigned seats they should board from the back I see no advantage to this new boarding. Just like every other airline

Flight boarded late after announcing on time boarding. Flight arrived only a little late despite late departure. Had trouble connecting to WiFi

The Southwest experience has definitely taken a dive from its early days. You can no longer deferentiate from other airlines. Air travel is too expensive. Southwest is no longer budget friendly. They have lost me as a loyal customer.

The charges were ridiculous for an hour flight and the turbulence was very scary.

The seats are now more narrow. I paid for front row the seats in the front are even more narrow than before.

The wifi on the plane is great. The only issue that I have is that I prefer an aisle seat and on my trips this week, I was either in the middle or window. If we can work to secure aisle seating, I will be thrilled. Nice trip.

Great flight but super high price. Glad it was a business trip and not personal

3 hour delay. Had to change plans and was still delayed.

We got exit row seats both flights. Everything was running on time

Flight was delayed by 3-hours and their fix was… complimentary pretzels.

The crew, and fellow passengers, were super gracious and kind. There seemed to be plenty of bin space even though the plane was full. It’s nice to get a glass of wine with dinner in Premiere seating, and there was a lot of food.

Everything I mentioned earlier - the airbus was more comfortable indeed and the experience was further enhanced.

The plane was an older model, so it wasn’t as comfortable as others. The flight attendants were not helpful during onboarding. It was a full flight so there was chaos finding space for baggage.

Awesome! On time flight, early arrival, and a complimentary upgrade!

It was nt delta. It was aeromexo. Service was awful. They served a very small drink and NO snack for a 3hr and 35min flight. Then for the first 30 min of the flight is was talk and talk over head interruption the movie/ show i picked to watch.

Delta One is extraordinary. I fly business when somebody hires me. I just wonder why there is such a chasm between business class and the insanely inhumane and nonsensical coach. The seats are not large enough to fit even my tiny wife. We fly 10% of what we did because we don’t want to pay 5-10 k but for $400 it’s unbearable. It seems like the accountants took over and made stupid decisions. Screw in 20 extra seats and make it so unbearable that people fly 90% less. Just put the damn price up and put some proper chairs in. But business, yay.

Delta’s staff is unmatched. From the gate agents, to the pilots, to the flight attendants… all top of the industry.

The flight was delayed for about 2 hrs. Other than it, it was good.

I am extremely disappointed that delta internal pilot manuals now refer to the Gulf of Mexico as the “gulf of America”. You can bow down to the Orange turd on your own. I will never fly delta again

Seats are uncomfortable. This has been a trend in the industry for decades. Trying to fit more seats on each plane to increase profits at the expense of the passenger.

Staff were good. My seat was in need of repair, but for a short flight was not problematic. Usual basic snack and drink setup that you'll find on any US carrier. Over, a decent, basic flight.

Complimentary light meal would be appreciated. But great flight crew service on all legs

Flight delayed for more than 16 hrs and no effort was spent to provide an alternate

We had turbulence ever 1/2 hr or so and the captains announcements were SOOOO LOUD

Women boarding passengers at the gate was absolutely rude and disrespectful of passengers. The flight attendant was absolutely delightful! Smiling and connected with the passengers. So happy. The seats are cramped and uncomfortable but I guess that’s just the way it is Communication regarding flight was excellent

it was a very short flight so my expectations were low.

Entertainment kept turning itself off. Gave up on watching a movie.

Very disappointing given gate agent behavior. Filed a formal complaint with United.

Crew was great (professional, attentive, prompt). Snacks for 4 hrs flight is deplorable.

They are rarely on time! Very hard to plan your travels when flights or connections keep getting delayed.

My seat was assigned last row behind restrooms No legroom’s I’m very Pettit Still was not comfortable Food choice was excellent

The worst Airline ever. They centered my second flight and leave me in NY. They don’t have any representatives at the airport and they don’t respond to calls. Basically I got stuck. I will never purchase through there again.

The chicken wrap was tiny ($13 for what looked like a 1/3 of a normal wrap?) and disgusting.

Mediocre would be best description. Food bland. Seat biz class uncomfortable to sleep. Crew never dimmed lights completely in an overnight flight to Europe. Would avoid AA if possible.

Small plane, poor meal choices for first class, bad terminal and boarding experience at LAX

Massimo, flight attendant was very authentic, attentive - wonderful. Food/wrap was just okay.

Experience was great. The best part is the free Wi-Fi connection which helps me to work on the flight

The flight was fine. It's the satellite terminal that supports American eagle flights is what sucks. There is only one food option and everything there is way overpriced. I mean I know it's airport pricing, but it's even crazier than that. I bought a sandwich in a plastic container for $18.

The flight was really crowded. Flight attendants were just ok.

Everything you need to know for your flight from San Diego to Puerto Rico

Information on your arrival and departure airports