$147 Find Cheap Flights from San Diego to Puerto Rico - Compare and Save

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Cheap Flights from San Diego to Puerto Rico

Cheapest round-trip prices found by our users on KAYAK in the last 5 days
Aguadilla
Aguadilla2 stops$446
Ponce
Ponce2 stops$797
Aguadilla
Aguadilla2 stops$446
Ponce
Ponce2 stops$797
Booking Insights

Price, demand and travel trends for San Diego to Puerto Rico flights

Use KAYAK data on prices, travel dates, airlines and seasonal trends to compare options and book flights with more confidence.

Are flights from San Diego to Puerto Rico cheaper or more expensive than last year?

Fares from San Diego to Puerto Rico are running about 10% lower than they were around this time last year, averaging $489 round-trip.

What are the cheapest fares from San Diego to Puerto Rico right now?

The cheapest fares from San Diego to Puerto Rico on KAYAK in the last week were to San Juan Luis Munoz Marin Intl (SJU) from $247 round-trip, and to Aguadilla Borinquen (BQN) from $446 round-trip.

What’s the cheapest month to fly from San Diego to Puerto Rico?

October is the cheapest time of year to fly, with average fares of $418. Prices are highest in December, when average flight costs increase to around $746.

When is the best time to book flights from San Diego to Puerto Rico?

Book your flights 26 weeks before your trip. KAYAK data collected over the past 12 months shows that booking in this window can save you around 42% compared to booking last-minute (within 2 weeks of departure).

Which airport in Puerto Rico is the cheapest to fly to from San Diego?

Based on KAYAK data from the past 12 months, the cheapest airports to fly into Puerto Rico are:

• Aguadilla Borinquen (BQN) from $485
• San Juan Luis Munoz Marin Intl (SJU) from $505

What’s the cheapest day to fly from San Diego to Puerto Rico?

Tuesday tends to be the cheapest day to fly from San Diego to Puerto Rico, while Sunday is the most expensive. Fares run about 28% higher that day, based on the past 12 months of KAYAK data.

What's the cheapest time of day to fly from San Diego to Puerto Rico?

Data from the past 12 months shows it's cheapest to fly to Puerto Rico during the night with average prices of $482. The afternoon is the most expensive time to fly, with average prices of $608.

Key details for San Diego to Puerto Rico flights

Low season

October

Cheapest flight

$147
Beat the crowds with an average 29% drop in travelers.
The most popular month to fly with an average 52% increase in travelers.
One-way flight from San Diego to San Juan Luis Munoz Marin Intl Airport

Your San Diego to Puerto Rico flight questions, answered

Find helpful answers about this route, including flight times, airports, airlines and booking tips.

  • Is now a good time to book a flight from San Diego to Puerto Rico?

    Yes. Fares from San Diego to Puerto Rico are low right now. As a rule of thumb, a round-trip under $409 (cheaper than most fares this year) is a good deal, so if you spot one at or below that, it's a good time to book.

  • How much should I budget for a flight from San Diego to Puerto Rico?

    Over the past 12 months, round-trip fares from San Diego to Puerto Rico have ranged from $409 to $685.

  • What are the main airports serving Puerto Rico?

    Flights to Puerto Rico use two main airports, San Juan Luis Munoz Marin Intl (SJU) and Aguadilla Borinquen (BQN).

  • What airlines fly nonstop from San Diego to Puerto Rico?

    Based on the flight schedule for the next 3 months, no airline regularly operates nonstop flights from San Diego to Puerto Rico. One-stop options include:

    • American Airlines
    • United Airlines
    • Delta

  • Which cabin classes are available on flights from San Diego to Puerto Rico?

    On flights from San Diego to Puerto Rico you can book Economy Class, Premium Economy Class, Business Class or First Class.

  • What are some popular landmarks in Puerto Rico?

    KAYAK travelers' favorite landmarks in Puerto Rico include:

    • Viejo San Juan
    • Condado Beach
    • Puerto Rico Convention Center
    • Ocean Park

  • What type of travel documents will I need to travel to Puerto Rico?

    Because Puerto Rico is a United States territory, there is no need to take either a passport or a visa with you to travel to this location. It is important to remember that you will need proper identification to travel to Puerto Rico just as you would any other state in the United States.

  • If I plan on renting a car when I arrive in Puerto Rico, what child car seat laws should I be aware of?

    In Puerto Rico, every child under the age of four needs to travel in a child safety seat. For any children that are between the ages of four and eight years old or less than 57 inches tall, they must travel in a booster seat. All children that are 12 years old or younger need to travel in the rear of the vehicle.

  • If I am flying to San Juan Luis Munoz Marin International Airport, are there any easily accessible public transportation choices to get me from the airport to downtown San Juan?

    One of the most convenient ways to get from the airport to downtown is aboard the line D53 bus that makes trips from the airport to both Old San Juan as well as the convention center in the center of San Juan.

  • If I want to travel to the small island of Vieques on the eastern side of Puerto Rico, what is the best airport choice in Puerto Rico for me to get there?

    Your best choice is to take one of the many flights available to the San Juan Luis Munoz Marin International Airport. From there, you can travel aboard Cape Air by plane, or you can utilize the Puerto Rico Ferry service that makes the trip from the Ceiba Harbor to the island in around 1h.

Your guide to booking San Diego to Puerto Rico flights

Get tips on when to book, when to fly and what to know before your trip.
  • If you can plan ahead, the sweet spot for booking your flight is 26 weeks before your trip. KAYAK data shows fares in this window are around 42% lower than last-minute bookings (made within 2 weeks of departure). Not ready to commit? Set a Price Alert and we'll let you know when prices change.
  • If your travel dates are flexible, book your trip for October when flights are typically cheapest and avoid December when prices are at their highest.
  • Flying on Tuesday is usually the cheapest. Flights on Sunday cost about 28% more on average, so being flexible with your travel dates could help you save.
  • If you're looking to save, Aguadilla Borinquen (BQN) is the cheapest airport to fly into from San Diego. If you have onward travel, don't forget to factor in the cost of your journey by train, bus or domestic flight.
  • Start your trip in San Juan, which is the most popular destination in Puerto Rico. From there, it's easy to continue on to other popular destinations such as Carolina, Fajardo and Rio Grande.
  • A very popular destination for passengers traveling from San Diego to Puerto Rico is to fly to the San Juan Luis Munoz Marin International Airport (SJU). On this route, you'll find one-stop service aboard United Airlines, American Airlines, and JetBlue.
  • For passengers looking for a cheaper alternative to make the trip from San Diego (SAN) to the San Juan Luis Munoz Marin International Airport, consider the two-stop flights offered by both Spirit Airlines and Frontier Airlines that offer substantially lower fares than the one-stop offerings.
  • If you are looking for a public transportation alternative for getting to the San Diego International Airport, the Metropolitan Transit System's route 992 makes stops at both of the terminal buildings at the airport, offering service from downtown San Diego.
  • For travelers looking for a comfortable place to wait for their flight at the San Diego International Airport before their trip to Puerto Rico, one of the best choices is the Aspire Lounge inside terminal 2 at the airport. There is also a United Airlines United club and a Delta Airlines Sky Club at this airport.
  • If you are going to be traveling from San Diego to the Ponce Airport (PSE) in Puerto Rico, you will find a one-stop flight aboard a combination of Alaska Airlines and Spirit Airlines with a layover at Orlando Airport (MCO).

Reviews of the top 5 airlines serving from San Diego to Puerto Rico

 
Need help choosing which airline to fly with from San Diego to Puerto Rico? KAYAK airline reviews give an overall score for each airline based on loads of factors, including comfort, boarding, in-flight entertainment and more, to make your decision easier. See airline scores according to verified KAYAK customer reviews.
7.9
SouthwestOverall score based on 4222 reviews
7.4Entertainment
7.0Food
8.0Comfort
8.6Crew
8.1Boarding
Airline reviews

I liked how it boarded fast. I do not like how the seats are just too narrow, and I’m not a big person.

6.0 GoodRobert, Oct 2026
Read more Southwest reviews

I liked how it boarded fast. I do not like how the seats are just too narrow, and I’m not a big person.

had to check bag at gate when there was still overhead bin space. As usual the WIFI didn't really work.

Red eye from San Diego. Temperature of the cabin was way too warm and the air duct flowed very little air.

Great job Southwest! My family doesn't fly often but we felt safe the whole time.

Comfortable. Easy. No problems. Just wish they had gf options for snacks.

The charges were ridiculous for an hour flight and the turbulence was very scary.

The seats are now more narrow. I paid for front row the seats in the front are even more narrow than before.

The boarding and seat assignment system no longer works for me, but I know it is being replaced. Otherwise, I am good with the overall experience.

San Diego airport is brand new, spacious, airy and very smooth checkin at SW baggage drop.

No trays in our seats, we sat in first row, purchased a business class fare. Had to hold our drinks and snack in our hands. No plugs for our cell phones. Had to pay for it a drink cocktail each. Seats so uncomfortable.

The only issue is that the plane was HOT. This was not the case on my first flight so not sure why, but thankfully I had a portable fan with me. Everything else was great!

Seats were old and very uncomfortable. Coach seating is way too tight

Flight was delayed at airport with large backlog and WiFi was spotty

Flight was delayed from San Diego due to being overweight for weather conditions. We missed our connecting flight to our final destination due to the delay, as well as the connecting flight leaving before the scheduled departure time. We missed the connection within 10 - 15 minutes. We were booked on a later flight arriving 7 hours later. There were 7 passengers sharing the same originating and connecting flight.

Horrible, mismanaged ground issue resulting in a long delayed, next flight left early, waiting extra 7 hours in the airport, screen did not work

The internet on these planes stinks. Need to get starlink

Very good flight. Crew was great. No issues and we even arrived early.

Loved the crew! Sucks that we went from 1 hour and 8 minute layover to a 3 hour layover. But weather sucks like that.

Delayed flight (1hour) plus a long layover after an overnight flight with no backup plane available.

Crew was excellent. Comfort seats not as nice as other kinds of planes.

Entertainment was great. Seats were good. They did not have my pre-ordered hot food product available but did comp me something cold in place of the item.

Food was good. Clean aircraft. But why do the airlines make the seats so narrow?! Your executives should have ride in a seat so restrictive for 11 hours and see how miserable it is! When.we got to MUC they changed my boarding gate 3 times for my next flight!!!!

Flight was on time, clean, etc. Despite connecting to your wi fi I was unable to use your app to watch entertainment.

The back to back mechanical delays from Denver to San Diego and then on my return flight from Denver to Great Falls it added extra time both ways

Service was professional and quick. Premium economy seat was comfortable given the class

The staff was extremely helpful and friendly at all times! They went above and beyond to get us into an earlier flight in San Diego to make our connection in SFO possible, because our original flight did actually not make it! I did so much appreciate the UA team and how they made this possible. We also didn’t have seats together on the long flight to Singapore, but they found us seats together last moment with no additional cost! Nobody sat next to us, so that we were able to sleep! Thanks to UA for improving their service and Underpricer for booking this trip! Please be careful: 1,5 hrs for transfer in San Francisco might not be enough time in the future

Over 2.5 hour maintenance delay on first morning flight with no acknowledgement, compensation or even gesture of good will. Aircraft had overnighted at airport so issue should have been addressed prior to boarding. Over 3.5 hours before first slow and deliberate beverage service.

Complimentary light meal would be appreciated. But great flight crew service on all legs

The food was terrible this time. Otherwise pleasant, quiet, on-time.

I was in first class. The outlets at my seat did not work. The plane was shabby and run down. I had prepurchsed a day subscription for internet that was not redeemable. I had to repurchase the internet for my flight and then it didn’t work anyway. Quite disappointed in what was supposed to be the launch of a great vacation.

They lost my luggage and have ruined first day of my vacation. Still don’t have it. I have nothing. I also paid for a seat I did not get. They changed both our seats with no notice. Will never fly this airline again.

Flight was delayed 3 hours. No food on plane besides snacks

I have flown Jet Blue many times between JFK and SFO. I appreciate how clean the planes are, the ability to select my onboard entertainment and the flight crews have always been amazing! Unfortunately, my trip from SFO to JFK on August 23 was unusual. I arrived early at SFO for the 12:00 noon scheduled boarding. The flight was supposed to take off at 12:45pm but after sitting for a while, the plane had to return to the gate to have a generator inspected. After deplaning and then reboarding, we eventually took off around 3:30 pm. It was explained to the passengers that because the plane was using a backup generator, additional fuel was needed and the flight would take longer than originally scheduled. We were originally supposed to arrive at JFK at 9:32 pm but instead, arrived at midnight. Unfortunately, I was exhausted for the funeral I attended the next morning. As a passenger, I have always expected that the plane will be in good mechanical order and that all parts will function as expected. I'm not entirely certain that if I fly Jet Blue in the future, that I will have the same level of confidence that I had become accustomed to. Thanks for the opportunity to provide this feedback. Kathy Nigro

My screen didn’t work, my seat didn’t recline, the flight attendant was rude and completely dismissive, the airplane was freezing, the seats are way old, slanted and uncomfortable. I payed for a full ticket and got a horrific experience, with a flight attendant who dismissed me even though I was calm respectful and polite.

JetBlue cancelled the flight. We had to rebook on another airline.

The flight was on time the crew was courteous that makes for a good flight.

The seats were roomier than other airplanes I’ve been on.

Seats were great, the staff was great, and the food was about the best I've had on a plane, and is especially the best of any US-based carrier I've flown. Free Wi-Fi was also great.

It was inexplicably canceled and we are stuck in LA, haven't gotten home and it has been an inconvenience having lost work (on unpaid leave for my husband).

Flights with JetBlue from San Diego to Boston are a miserable experience. The flight was delayed about 1.5 hours due to “weather” supposedly but the flights for other airlines left on time so it just have been some kind of weather that only affects JetBlue. I had a small carry on - purse. The crew stored it in a bin 2 rows down from me because they were using the bin next to my seat for other people’s stuff. The TV screen in the emergency row seats does not work. It just was awful from start to finish. When we landed, we had to sit inside the plane for a very long time because the plane had to be moved to a different gate.

I was truly shocked at how poor this flight went. The crew was not friendly during the checking process. The asked for people to gate check and were rude about it. They didn't handle my luggage with care. When I got to my seat I noticed a large section of the ceiling vent area was, no joke, TAPED TOGETHER WITH CLEAR PACKING TAPE! To add insult to injury, the back rest button was disabled on my seat and all the seats I could see. The wifi, never connected for me, despite troubleshooting it for a while. I did everything from restarting my wifi/phone to forgetting the network and restarting the app. But that didn't stop the mandatory 2 ads from playing every single time. Even the bags took over 45 mins to arrive at the carousel. Everything about this flight was a flop and I am beginning to notice that some of these events are becoming a trend. Perhaps it's time I switch loyalty programs.

Had to pay for WiFi, delayed start, and sat on the runway forever.

More space for economy, and the bathroom size is only for people with size XS

Well, true to American Airlines, both of my flights were delayed. But it’s a good thing that American is so consistently incompetent because if the first flight was delayed in the second flight was on time then I might’ve had a problem..

Was not able to do a online check-in because the American Airlines system doesn't store our visa or other passport information, allowing us to have a trouble-free check-in. We were forced to have to check-in at the counter which Changes are upgrade status given that we were not able to check in much earlier.

The entertainment package was vast and the selections were very current. Keep updating it was great.

The seat was so hard my tailbone was aching The crew was kind of a b**** because I made a joke that I didn't care if they close the door I total c*** when she was trying to f****** act like she was mad at me because I said that The flight was bumpy. Sure you didnt have control over that.

Cramped seats. FAA should make airlines have more legroom, for even short people complain

Flight was full, and would have preferred an aisle seat, but due to getting a late ticket ,the seat I had was adequate. The flight crew were very help full and hard working. Food and drink were excellent for the 11hr flight. Overall I was pleased with flight, and would recommend British Airways again.

The plane was late and then sat on the runway for almost 45 minutes before taking off.

More options for your flight from San Diego to Puerto Rico

Complete your trip to Puerto Rico with a hotel stay or car rental