$149 Find Cheap Flights from Puerto Rico to San Diego

This is the cheapest one-way flight price found by a KAYAK user in the last 72 hours by searching for a flight to San Diego departing on 5/13. Fares are subject to change and may not be available on all flights or dates of travel. Click the price to replicate the search for this deal.
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These are the airlines KAYAK users have selected most often from within our search results for flights to San Diego
These are the airlines KAYAK users have selected most often from within our search results for flights to San Diego
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Flights Deals

Cheap Flight Deals from Puerto Rico to San Diego

 
Here are some of the best deals found on KAYAK recently from the most popular airlines for round-trip flights from Puerto Rico to San Diego that are departing in the next months. While these flights were available on KAYAK in the last 72 hours, prices and availability are subject to change and deals may expire.

Recent round-trip flight deals from Puerto Rico to San Diego

KAYAK's recommended round-trip deals from the most popular airlines that fly from Puerto Rico to San Diego.
Discover the best prices for you by selecting your travel dates on KAYAK.
Spirit Airlines Logo
12:36 pm - 11:56 pmSJU-SAN
14h 20m2 stops
Spirit Airlines Logo
8:48 pm - 11:31 amSAN-SJU
11h 43m2 stops
$259Spirit Airlines
Find Deal
Sat, May 10 - Sun, May 18
Spirit Airlines Logo
12:36 pm - 11:56 pmSJU-SAN
14h 20m2 stops
Spirit Airlines Logo
8:48 pm - 11:31 amSAN-SJU
11h 43m2 stops
$267Spirit Airlines
Find Deal
Fri, May 30 - Tue, Jun 3
JetBlue Logo
9:25 pm - 9:05 amSJU-SAN
14h 40m1 stop
JetBlue Logo
8:29 pm - 1:05 pmSAN-SJU
13h 36m1 stop
$352JetBlue
Find Deal
Sat, Jul 12 - Thu, Jul 17
American Airlines Logo
8:00 am - 8:15 pmSJU-SAN
15h 15m1 stop
American Airlines Logo
4:29 pm - 5:06 amSAN-SJU
9h 37m1 stop
$413American Airlines
Find Deal
Fri, Jun 6 - Fri, Jun 20
JetBlue Logo
7:30 am - 7:15 pmSJU-SAN
14h 45m1 stop
JetBlue Logo
8:25 pm - 11:01 amSAN-SJU
11h 36m1 stop
$430JetBlue
Find Deal
Thu, Jun 5 - Sun, Jun 8
United Airlines Logo
12:15 am - 1:40 pmBQN-SAN
16h 25m2 stops
United Airlines Logo
6:45 am - 11:09 pmSAN-BQN
13h 24m2 stops
$431United Airlines
Find Deal
Wed, Sep 10 - Wed, Sep 17
United Airlines Logo
1:05 am - 9:36 amSJU-SAN
11h 31m1 stop
United Airlines Logo
9:20 pm - 12:00 pmSAN-SJU
11h 40m1 stop
$441United Airlines
Find Deal
Tue, Oct 14 - Mon, Oct 20
American Airlines Logo
8:00 am - 8:13 pmSJU-SAN
15h 13m1 stop
American Airlines Logo
11:00 pm - 2:47 pmSAN-SJU
12h 47m1 stop
$455American Airlines
Find Deal
Thu, Aug 21 - Thu, Sep 4
Alaska Airlines Logo
2:50 pm - 11:59 pmSJU-SAN
12h 09m1 stop
Alaska Airlines Logo
4:43 pm - 5:12 amSAN-SJU
9h 29m1 stop
$555Alaska Airlines
Find Deal
Mon, May 26 - Mon, Jun 2
Alaska Airlines Logo
6:15 am - 2:29 pmSJU-SAN
11h 14m1 stop
Alaska Airlines Logo
4:29 pm - 5:06 amSAN-SJU
9h 37m1 stop
$560Alaska Airlines
Find Deal
Thu, Jun 5 - Thu, Jun 5
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KAYAK's insights & trends for flights to San Diego

Get data-powered insights and trends for flights to San Diego to help you find the cheapest flights, the best time to fly and much more.

What is the cheapest month to fly to San Diego?

To calculate monthly average prices, KAYAK takes all prices for each month over the last year for flights to San Diego, removes the top 0.1% to account for outliers, and then takes the median of all values for each month.

The cheapest month for flights to San Diego is August, where tickets cost $382 on average for return flights. On the other hand, the most expensive months are February and December, where the average cost of tickets from Puerto Rico is $583 and $574 respectively. For one-way flights, the best month to travel is August with an average price of $382.

How far in advance should I book a flight to San Diego?

To calculate weekly average prices, KAYAK takes all prices for each week before departure over the last year for round-trip flights to San Diego, removes the top 0.1% to account for outliers, and then takes the average of all the values for each week.

To get a below average price, you should book around 3 weeks before departure. For the absolute cheapest price, our data suggests you should book 25 weeks before departure.


Good to know

Low seasonFebruary
High seasonDecember
Cheapest flight$149
Best time to beat the crowds but there is an average 16% increase in price.
Most popular time to fly with an average 15% increase in price.
Flight from San Juan to San Diego

FAQs - booking San Diego flights

  • How far is San Diego Airport from central San Diego?

    There are 3 miles between San Diego city center and San Diego Airport.

  • What is the name of San Diego’s airport?

    San Diego is served by San Diego Airport, also commonly referred to as Lindbergh Field, San Diego, or San Diego Intl. The airport code is SAN.

  • What is the cheapest day to fly to San Diego?

    Based on KAYAK data, the cheapest day to fly to San Diego is Thursday where round-trip tickets can be as cheap as $448. On the other hand, the most expensive day to fly is Friday, where round-trip prices are $538 on average.

  • How does KAYAK find such low prices on flights to San Diego?

    KAYAK is a travel search engine. That means we look across the web to find the best prices we can find for our users. With over 2 billion flight queries processed yearly, we are able to display a variety of prices and options on flights to San Diego.

  • How does KAYAK's flight Price Forecast tool help me choose the right time to buy my flight ticket to San Diego?

    KAYAK’s flight Price Forecast tool uses historical data to determine whether the price for a flight to San Diego is likely to change within 7 days, so travelers know whether to wait or book now.

  • What is the Hacker Fare option on flights to San Diego?

    Hacker Fares allow you to combine one-way tickets in order to save you money over a traditional round-trip ticket. You could then fly to San Diego with an airline and back with another airline.

  • What is KAYAK's "flexible dates" feature and why should I care when looking for a flight to San Diego?

    Sometimes travel dates aren't set in stone. If your preferred travel dates have some wiggle room, flexible dates will show you all the options when flying to San Diego up to 3 days before/after your preferred dates. You can then pick the flights that suit you best.

  • What is the cheapest time of day to fly to San Diego?

    The cheapest time of day to fly to San Diego is generally in the afternoon, when round-trip flights cost $474 on average. The most expensive time of day to fly to San Diego is generally in the morning, which is peak travel time and where the average cost of a ticket is $563.

  • How many direct flights to San Diego are there each week?

    Each week there are around 2,346 direct flights from within Puerto Rico to San Diego. The most common day for departures is Sunday, with 16% of flights taking off on this day.

Top tips for finding cheap flights to San Diego

  • Enter your preferred departure airport and travel dates into the search form above to unlock the latest San Diego flight deals.

Top 5 airlines serving from Puerto Rico to San Diego

 
See real verified KAYAK customer reviews for airlines flying to San Diego. Airline scores are aggregated from all reviews left by passengers on KAYAK after flying with an airline from Puerto Rico to San Diego. KAYAK doesn’t show reviews that are older than 5 years. Learn how KAYAK collects reviews.
Need help choosing which airline to fly with to San Diego? KAYAK airline reviews give an overall score for each airline based on loads of factors, including comfort, boarding, in-flight entertainment and more, to make your decision easier. See airline scores according to verified KAYAK customer reviews.
8.0
Alaska AirlinesOverall score based on 9968 reviews
7.1Food
8.2Boarding
8.5Crew
7.1Entertainment
7.9Comfort
Airline reviews

The flight was canceled and very little help given at the check in desk. Everyone at the desk says: just go on the app and see how they rebooked you. I mean come on it’s embarrassing customer service.

2.0 MediocreAnonymous, Mar 2025JAC - SAN
Read more Alaska Airlines reviews

The flight was canceled and very little help given at the check in desk. Everyone at the desk says: just go on the app and see how they rebooked you. I mean come on it’s embarrassing customer service.

The registration was chaotic. The kiosks didn't work for most people, and most had to do registration and receive boarding slips with a person. It took about an hour to get through he process, and I was worrying that I will be late to the flight. However, the personnel was great - courteous, professional, and was able to work through the problems.

I upgraded my seat and the service and boarding were wonderful. My flight attendant was very helpful when I experienced nausea on the flight (a first time experience). Flight arrived early which was nice. The only negative was many airlines have screens to provide some on flight entertainment, this aircraft did not. I had planned to read and listen to an audiobook on my flights, so no big deal on my part. The USB plug ins were broken on both my seat and the center seat, so I was not able to charge my phone during the flight, I will add 2 of the three USBs were broken on ride from San Diego as well. I would attribute this to the design, it is a very awkward angle to plug in, so frequent and perhaps not so gentle attempts to plug in have caused them to break.

Stay with what you are doing. Excellent service and ahead of schedule. Well done.

We had to cancel and we’re treated fairly with 100%refund quickly

There was an issue with water that led to us not having potable water onboard. They dumped the onboard water and we were two hours late taking off.

All good. Great food and entertainment when there isn’t any on a one hour flight

The flight from San Diego to San Jose gate 28A The two persons working there didn’t even turn on the display board. The display board saying to Sacramento. When I asked she was rude and showed the board . Then he realized And changed. Every one was confused because we are running late to catch that flight coming from IAD. Very irresponsible staff.

Great crew, great boarding, old B-list movies, no free meal service, child kicking my seat back all flight long, early arrival, then 40 minute, confused wait for bags.

I liked the flight attendant named Tyler. He was charismatic and genuine. I like the pilot in my second flight, he was considerate to everyone’s feelings. I liked the people I sat beside. I like the plane size. I like Alaska airlines

This had nothing to do with Delta… The flights were on time and flawless. The service was excellent. We purchased seats in (aisle/middle) comfort plus since this was a cross country flight. Unfortunately, the woman seated at the window was 300+ pounds and, as might be expected, covered up about a third of the middle seat also. there was absolutely nothing that Delta could have done about that… I just don’t know what the answer should be. If you purchase a seat, you should should be able to use the entire seat and not just the portion that someone else is not sitting/oozing in. Disappointing…there should be something that could be done….I'm just not sure what solution could be.

I love the free WiFi!! Crew was nice. Bathroom was decent. First time flying delta in a long time and I enjoyed it. Will definitely look into booking with Delta more but I think Delta is a little more expensive than the other airlines.

Seats are much much more comfortable than United, which is what I usually fly

If I pay extra for "comfort+" I expect leg room where I can stretch my legs. I was seated with an attendant's seat blocking my feet. Knee space was fine but my feet had less room than the non-"comfort+" seats. Also, don't go cheap on food when you have flights of 3+ hours. It's insulting.

Only one side of the heafphone jack work. Crew was friendly and helpful.

Great. Flight departed early and arrived early. Deplaning and baggage claim ww were quick.

They separated our seats and moved us to the back of the plane. Hundreds of dollars and thousands of miles used and this was my platinum member experience.

Since it wasn’t a Delta flight, I was not able to sit with my group and there was no entertainment.

Three adults, three children. They did not give us seats together. Two seats together, in row 23, one in 13, one in 14, one in 10, and one in 17. When we got on the plane, the crew tried to ask people to move but basically threw up their hands. One person moved so we had two pairs of seats together. The 1.5 year old sat on a parent's lap (despite having paid for his own seat).

the fight attendants were great and i appreciated that they had season 1 of The Wire from HBO as a viewing option

A bit rush for transit. Food and entertainment are not available

Wonderful and fast TSA checkpoint. The line was fast and our gate was close by

The gate was too far away for the connecting flight

Generally good. The aisles have gotten narrower which can slow down boarding. Flight crew was great! Healthier complimentary snacks would be appreciated. Due to earthquake in San Francisco we had to circle in air space for a bit but then had a smooth landing. I laud the flight crew for their patience ;)

We tried to upgrade to economy premium but were told this was not possible as we had booked through United Airlines (and Air Canada was operating the flight). This seemed silly given there was ample space in economy premium. Additionally, we had to wait almost 1.5 hours upon arrival to taxi to the gate. Otherwise, the crew were very pleasant and passengers were friendly.

headphone jack didnt work for the first flight and not much variety

The agents was very rude and they charged me $50 for a carry-on bag saying that it was too big and then I saw someone going on a plane with the same size bag as me

For the most part united was a good experience, how ever when they came by with the snacks and water, they completely passed by my wife and I. As we were in separate rows. On a 5 hr flight we were not offered water

Fantastic crew. Flight was delayed at last minute but we were given updates every 20 minutes and the crew was so friendly and considerate. I miss the touch screens on the back of the seats, wish they would bring that back though.

Beijing PEK to SFO. I had an economy seat on this flight. The seat comfort was acceptable. My main complaint is with the FA’s lack of personality and absence from servicing the plane, specifically restroom care (I wish I could share a pic of the restroom that I captured) and care of travelers—drink cart/availability of drinks. I'm amazed at the level of service on other International travel where a passenger is most often appreciated.

Excellent. Although they used to greet me as a mosaic member and provide a free drink, early boarding helps me to keep coming back to JetBlue.

Great flight. Departed early, arrived early. However they were out of meals for sale. Also, we arrived early and the gate was not available so we sat on the taxiway for quite a while (not JetBlue’s fault).

The gate and ground staff were excellent, friendly, went out of their way to acknowledge my Mosaic status. The plane was an older Airbus, so the seats were a little worn. The in flight attendant was not very nice, and seemed to be annoyed to be at work or be on this flight. Flight was fast and we landed early and pilots kept us informed.

Cancelled flight with no specific instructions to get a boarding pass for another flight. The whole flight of people were in line for an hour because there was only 1 person to help at the desk. This was unusual for JetBlue.

The inflight system with their wifi is a hot mess and doesn't work. Separately they do, but when you try to do theoretically simple things like pair a device for control it all falls apart

It was too hot in the cabin. The AC did not help.

The regular feedback of any changes to our flights. The Jetblue staff were very helpful. Our flights were great. Lots of leg room!

Except for the 28 minute delay leaving and the earlier reschedule to a later takeoff time the flight was good.

Loved the leg room and tvs screens on the seats and free WiFi. Wish the price was lower and could save by rebooking

It took 1-1/2 hours to get our luggage after we landed. That to me is unacceptable

One bottle of water and a package of cookies for comfort plus. We had to literally beg a flight attendant for an extra bottle of water later in the flight due to feeling dehydrated.

Flight boarded from Gate 39 at OGG, the farthest gate in the terminal. There were no Hawaiian themed amenities for the flight. The first class service was mediocre at best; I received not special welcome or recognition as an executive platinum member of American Advantage program. The flight attendants were more concerned with their cell phones than saying "thank you" to the passengers as we disembarked. Fortunately, the flight arrived at LAX a few minutes early.

Bigger seats. Board back to front! Disembark front to back!

Extraordinary service in business class, and very good breakfast and snacks. A really lovely flight.

This flight didn’t happen because AA agents didn’t let us board the flight

Plane was pretty clean, staff was friendly and helpful, flight left about on time arrived early. Took a long time to board and get off the plane - carry on items didn't have enough room so people had to move all around to find places.

The service and food needs to improve to catch up with other international flights

Would have been good to have a meal since it was a 5.5 hour flight

We boarded after several delays due to mechanical failure and a gate change. The seat cushion in the exit row was very compressed and offered no cushion, making the four-hour journey reasonably uncomfortable. The WiFi worked for a few people, but for most, it did not, and you cannot get entertainment unless you can connect—American Airlines flights do not have seatback screens, and you must use your mobile phone.

AA is always pretty solid. Was on time all the way around today so can’t complain!

Everything you need to know for your flight to San Diego

Information on the airport you'll fly into in San Diego

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