SJU - SAN

$138 Find Cheap Flights from San Juan to San Diego

This is the cheapest one-way flight price found by a KAYAK user in the last 72 hours by searching for a flight from San Juan to San Diego departing on 10/3. Fares are subject to change and may not be available on all flights or dates of travel. Click the price to replicate the search for this deal.
1 adult
1 adult, Economy

KAYAK searches hundreds of travel sites at once for deals on flights to San Diego

 
These are the airlines KAYAK users have selected most often from within our search results in flight searches from San Juan to San Diego, as well as popular online travel agencies
These are the airlines KAYAK users have selected most often from within our search results in flight searches from San Juan to San Diego, as well as popular online travel agencies
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Flight Deals

Cheap Flights from San Juan to San Diego (SJU-SAN)

 
Here are some of the best deals found on KAYAK recently from the most popular airlines for round-trip flights from San Juan to San Diego that are departing in the next months. While these flights were available on KAYAK in the last 72 hours, prices and availability are subject to change and deals may expire.
Discover the best prices for you by selecting your travel dates on KAYAK.

Recent round-trip flight deals from San Juan to San Diego

Sat, Oct 25 - Mon, Nov 3
Delta Logo
7:15 am - 8:34 pmSJU-SAN
16h 19m2 stops
Delta Logo
7:40 am - 10:59 pmSAN-SJU
11h 19m2 stops
$275Delta
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Sat, Oct 25 - Mon, Nov 3
Delta Logo
7:15 am - 8:34 pmSJU-SAN
16h 19m2 stops
Delta Logo
7:40 am - 10:59 pmSAN-SJU
11h 19m2 stops
$285Delta
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Fri, Oct 24 - Wed, Oct 29
Frontier Logo
6:22 am - 8:08 pmSJU-SAN
16h 46m2 stops
Frontier Logo
2:24 pm - 11:19 amSAN-SJU
17h 55m2 stops
$287Frontier
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Fri, Oct 24 - Wed, Oct 29
Frontier Logo
3:05 pm - 9:37 amSJU-SAN
21h 32m2 stops
Frontier Logo
2:24 pm - 11:19 amSAN-SJU
17h 55m2 stops
$304Frontier
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Thu, Nov 6 - Mon, Nov 10
United Airlines Logo
3:46 pm - 9:53 pmSJU-SAN
10h 07m1 stop
United Airlines Logo
8:40 pm - 1:17 pmSAN-SJU
12h 37m2 stops
$308United Airlines
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Wed, Oct 15 - Mon, Oct 20
American Airlines Logo
5:30 am - 9:21 pmSJU-SAN
18h 51m1 stop
American Airlines Logo
10:45 pm - 6:25 pmSAN-SJU
16h 40m1 stop
$318American Airlines
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Thu, Oct 23 - Wed, Oct 29
United Airlines Logo
1:05 am - 9:33 amSJU-SAN
11h 28m1 stop
United Airlines Logo
6:15 am - 8:26 pmSAN-SJU
11h 11m2 stops
$327United Airlines
Find Deal
Wed, Oct 15 - Mon, Oct 20
American Airlines Logo
5:30 am - 9:21 pmSJU-SAN
18h 51m1 stop
American Airlines Logo
9:27 pm - 12:44 pmSAN-SJU
12h 17m2 stops
$358American Airlines
Find Deal
Wed, Feb 11 - Sun, Feb 15
Alaska Airlines Logo
6:45 am - 8:42 pmSJU-SAN
17h 57m2 stops
Alaska Airlines Logo
4:59 pm - 2:43 pmSAN-SJU
17h 44m1 stop
$426Alaska Airlines
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Sat, Oct 18 - Sun, Nov 9
JetBlue Logo
2:30 am - 10:49 amSJU-SAN
11h 19m1 stop
JetBlue Logo
9:05 pm - 11:25 amSAN-SJU
10h 20m1 stop
$444JetBlue
Find Deal
Booking Insights

KAYAK's insights & trends for San Juan to San Diego flights

Get data-powered insights and trends into flights from San Juan to San Diego to help you find the cheapest flights, the best time to fly and much more.

What’s the cheapest day of the week to fly from San Juan to San Diego?

The average price of all round-trip flights from San Juan Luis Munoz Marin Intl Airport to San Diego clicked on KAYAK for each day over the last 12 months.

Your flight ticket price will generally be cheaper if you fly to San Diego on a Thursday and more expensive on a Monday. On your return trip to San Juan, you should consider flying back on a Saturday, and avoid Sundays for better deals.

What is the cheapest month to fly from San Juan Luis Munoz Marin Intl Airport to San Diego?

To calculate monthly average prices, KAYAK takes all prices for each month over the last year for round-trip flights from San Juan Luis Munoz Marin Intl Airport to San Diego, removes the top 0.1% to account for outliers, and then takes the median of all values for each month.

The cheapest month for flights from San Juan Luis Munoz Marin Intl Airport to San Diego is September, where tickets cost $448 (return) on average. On the other hand, the most expensive months are February and April, where the average cost of round-trip tickets is $584 and $574 respectively.

How far in advance should I book a flight from San Juan Luis Munoz Marin Intl Airport to San Diego?

To calculate weekly average prices, KAYAK takes all prices for each week before departure over the last year for round-trip flights from San Juan Luis Munoz Marin Intl Airport to San Diego, removes the top 0.1% to account for outliers, and then takes the average of all the values for each week.

To get a below average price on the flight from San Juan Luis Munoz Marin Intl Airport to San Diego, you should book around 3 weeks before departure, which saves you about 43% compared to booking last minute. For the absolute cheapest price, our data suggests you should book 21 weeks before departure.

Good to know

Low seasonFebruary
Cheapest flight$138
Best time to beat the crowds but there is an average 15% increase in price.
Most popular time to fly with an average 13% increase in price.
Flight from San Juan to San Diego

When to book flights from San Juan to San Diego

Are your dates flexible? Find out the best times to travel from San Juan to San Diego based on our flight data from the last year. Discover the cheapest month and even day to fly.
Estimated round-trip price
KAYAK looks at all historical flight data for each date to provide a predicted price for one-way trips or round-trips with a duration up to 40 days. While we try to provide actual minimum prices for each date, some prices are predictions and actual prices may differ.

FAQs for booking San Juan to San Diego flights

  • What is the cheapest flight from San Juan Luis Munoz Marin Intl Airport to San Diego?

    In the last 3 days, the lowest price for a flight from San Juan Luis Munoz Marin Intl Airport to San Diego was $138 for a one-way ticket and $275 for a round-trip.

  • Do I need a passport to fly between San Juan and San Diego?

    Yes, you'll most likely have to show a valid passport before boarding the plane in San Juan and on arrival in San Diego.

  • Which airports will I be using when flying from San Juan to San Diego?

    San Juan and San Diego are both served by 1 main airport. You will leave San Juan from San Juan Luis Munoz Marin Intl and will be arriving at San Diego.

  • Which aircraft models fly most regularly from San Juan to San Diego?

    We unfortunately don’t have that data for this specific route.

  • Which airline alliances offer flights from San Juan to San Diego?

    Star Alliance, oneworld, and SkyTeam are the airline alliances operating flights between San Juan and San Diego, with oneworld being the most commonly used for this route.

  • Which is the best airline for flights from San Juan to San Diego, Alaska Airlines or Southwest?

    The two airlines most popular with KAYAK users for flights from San Juan to San Diego are Alaska Airlines and Southwest. With an average price for the route of $574 and an overall rating of 8.0, Alaska Airlines is the most popular choice. Southwest is also a great choice for the route, with an average price of $489 and an overall rating of 8.0.

  • How does KAYAK find such low prices on flights from San Juan to San Diego?

    KAYAK is a travel search engine. That means we look across the web to find the best prices we can find for our users. With over 2 billion flight queries processed yearly, we are able to display a variety of prices and options on flights from San Juan to San Diego.

  • How does KAYAK's flight Price Forecast tool help me choose the right time to buy my flight ticket from San Juan to San Diego?

    KAYAK’s flight Price Forecast tool uses historical data to determine whether the price for a flight to San Diego from San Juan is likely to change within 7 days, so travelers know whether to wait or book now.

  • What is the Hacker Fare option on flights from San Juan to San Diego?

    Hacker Fares allow you to combine one-way tickets in order to save you money over a traditional round-trip ticket. You could then fly to San Diego with an airline and back to San Juan with another airline. Booking your flights between San Juan and SAN can sometimes prove cheaper using this method.

  • What is KAYAK's "flexible dates" feature and why should I care when looking for a flight from San Juan to San Diego?

    Sometimes travel dates aren't set in stone. If your preferred travel dates have some wiggle room, flexible dates will show you all the options when flying to San Diego from San Juan up to 3 days before/after your preferred dates. You can then pick the flights that suit you best.

Reviews of the top 5 airlines serving from San Juan to San Diego

 
See real verified KAYAK customer reviews for airlines flying from San Juan to San Diego. Airline scores are aggregated from all reviews left by passengers on KAYAK after flying with an airline. KAYAK doesn’t show reviews that are older than 5 years. Learn how KAYAK collects reviews.
Need help choosing which airline to fly with from San Juan to San Diego? KAYAK airline reviews give an overall score for each airline based on loads of factors, including comfort, boarding, in-flight entertainment and more, to make your decision easier. See airline scores according to verified KAYAK customer reviews.
8.0
Alaska AirlinesOverall score based on 10000 reviews
8.5Crew
7.1Food
7.8Comfort
7.0Entertainment
8.1Boarding
Airline reviews

Agent boarding us in San Diego lectured me on showing up on time for the flight, and said that if I had been three minutes later, he would have denied myself and my wife boarding. Our trusted traveler numbers were not in the system, even though I entered them when I bought the tickets. Our food orders were not in the system, even though I entered them prior to the flight. My wife requires a wheelchair, and that was delayed on both flights.

4.0 OkayAnonymous, Aug 2025SEA - SAN
Read more Alaska Airlines reviews

Agent boarding us in San Diego lectured me on showing up on time for the flight, and said that if I had been three minutes later, he would have denied myself and my wife boarding. Our trusted traveler numbers were not in the system, even though I entered them when I bought the tickets. Our food orders were not in the system, even though I entered them prior to the flight. My wife requires a wheelchair, and that was delayed on both flights.

Staff at Gate desk were helpful. My connecting flight from the first part of my trip Kona to Seattle was late. I had to run through SeaTac Seattle to catch my flight to San Jose. They made an exception to let me board. On my return trip San Jose to San Diego and San Diego to Honolulu the same thing happened. One flight arrived late and I had to run through the terminal to catch my connection. There are no Gluten-free & Vegan options meals and snacks to purchase.

Very pleasant , a flight attendant Jo did a great job mixing me up a beverage and just brightened the trip .

Spent 30 minutes in tarmac bcoz arrived earlier and crew nit ready for us. Told that the airport is being renovated so limited arrival space. 6 hours flight should have not two snacks but one major meal.

Flight attendant was rude when I advised her that the bathroom had no paper towels or tissue paper.

Departing flight to San Diego was delayed. Return flight from SD to SBP was delayed. Not terrible but not ideal

Good leg room, no problem with overhead storage and the staff was super helpful.

I purchased the internet during the flight and it stopped working after 1 hour, so I barely got to use it.

Good experience, although it was a little cramped being a tall person. Otherwise everything went smoothly and professionally though

Big delay of over 7 hours on next leg of trip with Alaska. Would have been nice to have food or something

The flight crew was friendly. I tried to adjust my seat online ahead of time but no option existed without additional fees. My friend asked at the gate about a seat change and was able to make it happen. That was great! The flight crew moved a very tall gentleman and his companion which allowed us to have more space which was nice. Overall, good experience. Appreciated the blanket and pillow.

I was uncomfortably cold on the plane. Other than that it was uneventful and therefore as enjoyable as a plane ride can be.

Food was surprisingly good but the WiFi was not great

My flight was extremely cold. I had a jacket and a cover was left in each seat. The cover was extremely thin and I have a disability, fibromyalgia and arthrithis and AC air is the worst. I closed my vent and my husbands vent and it still was frigid. I asked the attendant if I could get another cover and she quickly almost dismissively and totally unconcerned stating, (I quote) (one per chair) and walked off so quickly that I didn't get a chance to explain to her that I literally have adisability. I didnt want to make a seen so I set on that flight for over 5 hours in pain, joints locking up and extremely uncomfortable. When my fibromyalgia flares up my joints not only ache but they will lock up also and it takes me days to get back to my regular self even though I take medication for it. I felt like it would not have hurt anyone at all for her to just give me an extra cover because I'm sure they have all types of medical issues in people that fly every day.

Not a "Delta" issue, but a JFK issue: We booked a connecting flight with 3 1/2 hours between to clearn immigration and customs. Our inbound flight (BCN to JFK) was on the taxiway 45 minutes which ate into our layover time. Immigtration was insanely quick with the CBP MPC app; however, clearing TSA (again, after we were ALREADY cleared in Spain on the inbound international flight) took over 95 minutes. This left us with 10 minutes before boarding the connecting flight (JFK to SAN) to walk to the far end of Terminal 4 and try to find food. We didn't find any food that could promise to serve us in under 10 minutes so we boarded the Delta flight after coming off a plance and an 8-hour flight knowing that we wouldn't be served any food on the next 5 1/2 hour flight. I feel like Delta needs to put pressure on the JFK TSA to open more screening stations (by our count, we saw only 5 scanners open and a line of - as we said - over 90 minutes. The insult is that we WERE ALREADY SCREENED through TSA, but as you come off one flight into the USA, you have to go through the whole process again. It seems like if you have a connecting flight, there should be a way to pass through immigration and customs without needing to return through TSA.

There are 4 flights in consecutive gates with about the same departure time. Two flights were boarding at the same time. One was delayed or boarding would be happening at the same time. I am not sure what Delta and LAX need to do to have a better layout at the end of Terminal 2

5 hours of delay that could've been much shorter if Delta had taken the 1 hour delay they imposed on the flight before boarding to run any of the plane checks required for flight to find the hydraulic issue that required nearly 3 hours to fix. $24 of meal credit buys a sandwich and a soft drink. Poor communication within the terminal about what gate we'd be re-boarding from and when we'd be re-boarding.

The entertainment and wifi mostly didn't work on this flight.

Terrible entertainment system - kept freezing and audio kept cutting out. Snacks were mediocre at best for a 5 hour flight.

I am still upset that my bag was lost on a recent trip to Rome ; we were inconvenienced and out €150 Euros ; delta has refused to reimburse us

The flight was comfortable with the exit row and great service

Plane was crowded and even when we hit altitude, the plane was hot, not enough air flow.

1. when we went to check in, our 2 first class seats had been CANCELED and the flight was sold out. This was done without our prior knowledge. It was all we could do to restore one first class seat for my wife and I flew economy. 2, Our flight home was scheduled to leave at 10:30 pm. Due to tsunami warnings, the roads were closed and our flight status was uncertain as to whether it would leave as scheduled. It was announced that it would now leave at 11:20 pm and the roads were now open since the tsunami had come and gone. We made a mad dash to the airport and checked in. Delays were announced at 12:30 pm, 1:30 am, 2:30 am and at 3:30 am it was canceled. Since this was a flight due to natural (tsunami) causes, there was no compensation. We were told to return at 1:00 pm the next day and our baggage would be kept on the plane since the same plane was going to leave at 1:00 pm. We had to return to our hotel for the rest of the night. The same plane did not leave at 1:00 pm and our baggage was gone! All in all, it was a miserable performance by UA. Information was hard to obtain and no one knew what was going on and what was going to happen. Hundreds of passengers slept on the floor, chairs, etc. No food and no water was made available to the passengers. It was a situation where UA could care less what was going on. As a one million mile flyer, I had not experienced anything like this before and it was hugely disappointing!

I found the staff to not be very attentive at all. When paying for Business Class you expect a certain type of service and that was not found. They were almost rude even

Ok. Get a different kosher caterer. The food was odd.

Our experience on United Airlines was extremely poor. The plane was extremely cold throughout our entire flight- which multiple people complained about- and we had to wait 2 hours to get a blanket which was too thin and barely helped warm us up. As well as this, none of the entertainment features were working so we had to sit through a roughly 10 hour flight with nothing to keep our attention, including the actual flight path screen. It was an extremely disappointing experience and I would hope that this gets fixed if we ever choose United Airlines again.

I really enjoyed flying with United airlines amazing experience , good customer service and great food

1.It will be better if sandwich is warm. 2.The food is too salty. 3.Breakfast needs some vegetables or fruits.

Boarded plane and then delayed 1.5 hours while on the plane

It was all good flight was on time, service was good I enjoyed a few movies and everything was smooth

My flight was delayed for several hours. Sitting at gate 16 for several hours, I got a text from Kayak the gate changed to 9 before it was announced. Very bad communication at each gate from American Airlines employees. I received 10 notifications of delay from Kayak. My vacation started off horrible! I will write to American Airlines corporate office also.

Delayed flight that lead to a missed connection and a 5-hour trip became a 12-hour flight 🙄

There is no room, no gluten free options, or any free internet/entertainment. You have to bring your own tablet or smartphone because there are no screens.

American Airlines is a mediocre airlines: they do not maintain the highest standard of cleanliness in the cabins, and the food is not well thought out. Service is not at top of mind compared to other international airlines such as Singapore Airlines, JAL or others.

Amazing food, great staff, with one noticable detail missing ...but no seat entertainment in any of aircraft ...I am not a fan

Boarding gate in Honolulu was staffed with a great clerk with a soothing voice despite the flight delay of over an hour. Flight attendants in the plane were all grumpy, not pleasant looking bunch. Their sour attitude showed throughout the flight. Inly able to get a select few movies started. Most of the movie links in the “free entertainment” did not work.

I flew Business Class. Rory, one of the Cabin stewards, was attentive, explained the menu, provided appropriate drinks. was

This was a horrible experience. For a first class experience, my chair was held together by 3M tape - and I have a photo. The crew weren’t very attentive, somewhat dismissive and forgot my drink and snack, the chair reclined about 3 inches on a 6-hour cross country flight. I was also not informed that there was no lounge available in Newark airport because of renovations, so all around this was one of the worst experiences and I would actively avoid both American and Alaska Air going forward.

Boarding was very efficient. Everyone got on board and we got on our way very quickly. It was frustrating that the entertainment app was not functioning properly. I was not able to activate some of the movies offered. The crew on this flight appears to be pretty grumpy. They had no smile on their faces. I felt like they were doing us a favor for being there.

Loved the staff, boarding and drink options! Wish the comfort of the seat could have been better nevertheless

I paid extra for a seat closer to the front. The TV didn’t work at all for the entire flight. Would have been nice to know before I purchased an “upgraded “ seat

It was great. I had never flown on JetBlue before, but would be very happy to fly with them in the future.

Worst flight experience ever flights canceled. JetBlue told us just did not even bother standing in line to come back in one and a half hours then without any information we had to go pick up all of our luggage and spend over $2000 in accommodation just to get home. JetBlue said that the next flight available for us to get home would be three days later. Absolutely absurd hasn’t offered to give us any compensation do not fly JetBlue horrible company. They said it was based on the weather and the weather is great in all locations that we would’ve been flying to total hoax. I think it’s a conspiracy theory.

The captain gave good announcements and the flight attendants were friendly. The WiFi was pretty good. The plane itself looked very old inside and the seats were very uncomfortable. The screens in the seat backs were the smallest I’ve ever seen. There were so many loud and obnoxious kids on this flight and the parents didn’t do much to try to quiet them down. Some had videos and games on tablets with higher than necessary volume going the whole time.

Too many long delays with JetBlue. Worst major airline that serves JFK but unfortunately I keep going back because of the prices.

My JetBlue experience was nice. The flights ran on time, the aircraft was clean and comfortable, and the flight attendants were attentive. My only issue, which is isolated to the low-cost (budget) option at JetBlue, is that the check in process makes the user feel that they have to buy their seats. The seats offered for purchase are upgrades from the budget seats you get (which are essentially the last seats remaining). The interface should not make it feel like you must purchase a seat.

The plane was late to leave.. Internet was lousy. TV was not working. when we arrived, We stayed on the plane for a long time before we got to the gate. It took us a long time to retrieve our luggage because they didn’t know what carousel to send them to. It was a bad experience.

flight cancelled after 2 delays. left us sitting in JFK at 1am. no customer service to assist rebooking.

To not have food or proper snacks on a 5 hour flight was the worst.

I especially liked the lead crew officer. His boarding and safety announcements were made with a bit of novelty and humor. The flight also left the gate 10 minutes early and we landed about 20 minutes early… It was a delightful flight…

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