$80 Find Cheap Flights from Puerto Rico to Houston

This is the cheapest one-way flight price found by a KAYAK user in the last 72 hours by searching for a flight to Houston departing on 9/11. Fares are subject to change and may not be available on all flights or dates of travel. Click the price to replicate the search for this deal.
1 adult
1 adult, Economy

KAYAK searches hundreds of travel sites at once for deals on flights to Houston

 
These are the airlines KAYAK users have selected most often from within our search results for flights to Houston, as well as popular online travel agencies
These are the airlines KAYAK users have selected most often from within our search results for flights to Houston, as well as popular online travel agencies
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Cheap Flights from Puerto Rico to Houston

 
Here are some of the best deals found on KAYAK recently from the most popular airlines for round-trip flights from Puerto Rico to Houston that are departing in the next months. While these flights were available on KAYAK in the last 72 hours, prices and availability are subject to change and deals may expire.
Discover the best prices for you by selecting your travel dates on KAYAK.

Recent round-trip flight deals from Puerto Rico to Houston

Thu, Aug 14 - Sun, Aug 17
Spirit Airlines Logo
4:12 pm - 7:56 pmSJU-IAH
4h 44mnonstop
Spirit Airlines Logo
9:51 am - 3:07 pmIAH-SJU
4h 16mnonstop
$122Spirit Airlines
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Thu, Aug 14 - Sun, Aug 17
Spirit Airlines Logo
4:12 pm - 7:56 pmSJU-IAH
4h 44mnonstop
Spirit Airlines Logo
12:41 pm - 9:48 pmIAH-SJU
8h 07m1 stop
$134Spirit Airlines
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Wed, Oct 8 - Tue, Oct 14
American Airlines Logo
7:00 am - 5:13 pmSJU-IAH
11h 13m2 stops
American Airlines Logo
7:25 am - 6:25 pmIAH-SJU
10h 00m1 stop
$175American Airlines
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Thu, Oct 2 - Tue, Oct 7
American Airlines Logo
12:01 pm - 8:22 pmSJU-IAH
9h 21m1 stop
American Airlines Logo
6:01 am - 2:25 pmIAH-SJU
7h 24m1 stop
$179American Airlines
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Wed, Aug 13 - Sun, Aug 17
United Airlines Logo
2:05 am - 5:59 amSJU-IAH
4h 54mnonstop
United Airlines Logo
11:57 pm - 5:30 amIAH-SJU
4h 33mnonstop
$209United Airlines
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Sun, Aug 24 - Mon, Sep 1
Frontier Logo
3:39 am - 3:45 pmBQN-IAH
13h 06m1 stop
Frontier Logo
1:29 pm - 2:48 amIAH-BQN
12h 19m1 stop
$258Frontier
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Wed, Sep 24 - Sun, Sep 28
Southwest Logo
5:00 am - 1:45 pmSJU-HOU
9h 45m2 stops
Southwest Logo
6:30 am - 4:10 pmHOU-SJU
8h 40m1 stop
$263Southwest
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Thu, Aug 21 - Sun, Aug 24
Southwest Logo
11:10 am - 8:15 pmSJU-HOU
10h 05m2 stops
Southwest Logo
5:45 pm - 12:45 amHOU-SJU
6h 00m1 stop
$269Southwest
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Mon, Nov 3 - Mon, Nov 10
United Airlines Logo
1:09 am - 10:09 amBQN-IAH
11h 00m1 stop
United Airlines Logo
1:31 pm - 11:57 pmIAH-BQN
8h 26m1 stop
$525United Airlines
Find Deal
Wed, Nov 12 - Sun, Nov 30
Frontier Logo
3:43 am - 3:32 pmBQN-IAH
13h 49m1 stop
Frontier Logo
12:00 pm - 3:03 amIAH-BQN
13h 03m1 stop
$534Frontier
Find Deal
Booking Insights

KAYAK's insights & trends for flights to Houston

Get data-powered insights and trends for flights to Houston to help you find the cheapest flights, the best time to fly and much more.

What is a good deal for flights to Houston?

If you’re looking for cheap airfare to Houston, 25% of our users found tickets to Houston for the following prices or less: From San Juan Luis Munoz Marin Intl Airport $399 round-trip.

How far in advance should I book a flight to Houston?

To calculate weekly average prices, KAYAK takes all prices for each week before departure over the last year for round-trip flights to Houston, removes the top 0.1% to account for outliers, and then takes the average of all the values for each week.

To get a below average price, you should book around 2 weeks before departure, which saves you about 32% compared to booking last minute. For the absolute cheapest price, our data suggests you should book 5 weeks before departure.

Which is the cheapest airport to fly into in Houston?

Prices will differ depending on the departure airport, but generally, the cheapest airport to fly to in Houston is Houston Hobby Airport (HOU), with an average flight price of $248.


Good to know

Cheapest flight$80
Flight from San Juan to Houston George Bush Airport

FAQs - booking Houston flights

  • Which Houston airport is closest to central Houston?

    There are 2 major airports in Houston. The nearest airport from Houston city center is Houston Hobby Airport (9 miles), followed by Houston George Bush Airport (16 miles).

  • How much is a flight to Houston?

    On average, a flight to Houston costs $489. The cheapest price found on KAYAK in the last 2 weeks cost $121 and departed from San Juan Luis Munoz Marin Intl Airport.

  • What is the cheapest day to fly to Houston?

    Based on KAYAK data, the cheapest day to fly to Houston is Friday where round-trip tickets can be as cheap as $397. On the other hand, the most expensive day to fly is Sunday, where round-trip prices are $612 on average.

  • How does KAYAK find such low prices on flights to Houston?

    KAYAK is a travel search engine. That means we look across the web to find the best prices we can find for our users. With over 2 billion flight queries processed yearly, we are able to display a variety of prices and options on flights to Houston.

  • How does KAYAK's flight Price Forecast tool help me choose the right time to buy my flight ticket to Houston?

    KAYAK’s flight Price Forecast tool uses historical data to determine whether the price for a flight to Houston is likely to change within 7 days, so travelers know whether to wait or book now.

  • What is the Hacker Fare option on flights to Houston?

    Hacker Fares allow you to combine one-way tickets in order to save you money over a traditional round-trip ticket. You could then fly to Houston with an airline and back with another airline.

  • What is KAYAK's "flexible dates" feature and why should I care when looking for a flight to Houston?

    Sometimes travel dates aren't set in stone. If your preferred travel dates have some wiggle room, flexible dates will show you all the options when flying to Houston up to 3 days before/after your preferred dates. You can then pick the flights that suit you best.

  • What is the cheapest time of day to fly to Houston?

    The cheapest time of day to fly to Houston is generally at night, when round-trip flights cost $374 on average. The most expensive time of day to fly to Houston is generally in the evening, which is peak travel time and where the average cost of a ticket is $521.

  • How many direct flights to Houston are there each week?

    Each week there are around 5,762 direct flights from within Puerto Rico to Houston. The most common day for departures is Sunday, with 15% of flights taking off on this day.

Top tips for finding cheap flights to Houston

  • Enter your preferred departure airport and travel dates into the search form above to unlock the latest Houston flight deals.

Reviews of the top 5 airlines serving from Puerto Rico to Houston

 
See real verified KAYAK customer reviews for airlines flying to Houston. Airline scores are aggregated from all reviews left by passengers on KAYAK after flying with an airline from Puerto Rico to Houston. KAYAK doesn’t show reviews that are older than 5 years. Learn how KAYAK collects reviews.
Need help choosing which airline to fly with to Houston? KAYAK airline reviews give an overall score for each airline based on loads of factors, including comfort, boarding, in-flight entertainment and more, to make your decision easier. See airline scores according to verified KAYAK customer reviews.
8.0
SouthwestOverall score based on 4241 reviews
8.6Crew
7.5Entertainment
7.0Food
8.1Boarding
8.0Comfort
Airline reviews

southwest just starting charging for luggage. hadnt realized it until it was too late. now out $70 when i couldve bought a carry on if i wouldve known. free bags was one of the only reasons i chose southwest over another airline (the other being no assigned seats, which is apparently also being changed). stupid business decision. wont be flying southwest anymore.

2.0 MediocreAnonymous, Jul 2025AUS - RDU
Read more Southwest reviews

southwest just starting charging for luggage. hadnt realized it until it was too late. now out $70 when i couldve bought a carry on if i wouldve known. free bags was one of the only reasons i chose southwest over another airline (the other being no assigned seats, which is apparently also being changed). stupid business decision. wont be flying southwest anymore.

The quality of Southwest Airlines continues to degrade each time I fly with them. If it were not for the free luggage, I would probably choose another airline. Their prices are a little bit competitive, but way too high for the quality of the service. Southwest is not unique in this way. Domestic flight in the United States of America has continued to be a lower and lower quality product. Very sad when you compare the quality of domestic airlines to that of many international airlines around the world.

Multiple delays and gate changes. Arrived at final destination 6 hours late. All rental cars had been taken.

The movies using Southwest WiFi kept pausing and I had to restart multiple times.

First, my flight was a usual flight nothing exceptional or unexpected. Over all it was a normal, good flight! Second, your questionaire is wholly lacking in the proper options to which one can answer a question. Often on short flights, there is no food let alone entertainment so why isn't that reflected in your questionaire? A simple "not applicable" would cover that issue appropriately but no, your form arbitrarily enters an answer based on the initial assessment which normally isn't factual. Until you provide an accurate means of assessing flights, I'll no longer be completing of these unimpressive and misleading assessements. Thank you!

Easy to book and to get check in and get on and off.

First time I’ve ever missed a flight and it was an international flight.. Southwest put me on the next flight and it was the best experience possible.

It seems as though the provisions are even less. Although SWA used to be an economy Airline, that isn't really the case anymore. I paid over $700. for a round trip to Denver and I could have flown just about any airline for the price. The drinks are now in a 6-ounce cup and with ice I'm sure a can would fill more than 2 cups. However, I am very proud of SWA for using paper rather than continuing to contribute to the millions of plastic cups being used each day. I've thought of this fr many years and am so glad to see it come to fruition, if not by only SWA so far.

Service was great, boarding and exiting went smoothly, and the flight was very pleasant.

Southwest is amazing. The only issues I would have to say is. I don't like the unassigned seating, and the fact that the flight is completely sold out. It makes for a very tight fit. Other than that. Crew was great fun professional and attentive.

United sent me a mileage plus number last year but that number is invalid so I can’t use it to check into flights or collect mileage. There is human to speak about the problem, only computers who keep asking me if I am using the correct email. It’s so frustrating and I cannot resolve it.

The woman gate agent in Phoenix was none too sympathetic about my check-in process as I am relatively new with using apps. I almost did not get on because she said I did not check-in. I thought I had via Kayak where I purchased a very expensive ticket. Lesson learned but to be told I may not get on as a matter of factly was difficult to hear.

Flight was on time. Boarding was smooth. Flight attendants were friendly and efficient. Entertainment system was broken for all passengers on the left side of the aisle. I would prefer if meals were not served on red eye flights. No one should need to dine at that time and it is disturbing for those passengers trying to sleep.

Gate agent did not hold flight for connection, provided no assistance to get new flight

I always appreciate when everything is on time! In this flight you have a short connection and it could be stressful , but is was easy and fast. They even ask people to wait so the ones that have a short connection could leave before. It was the fist time that something like this happened.

The plane pushed back from the gate on time. However, it stopped on the ramp, and we waited for over 20 minutes before the aircraft pulled back to the gate. Apparently, something of importance had to be removed from the aircraft by the gate agent. I found this to be odd. The delay was not significant, but I felt that whatever was on the aircraft that had to be taken off, should’ve been done before we pushed back from the gate.

Smooth boarding process. Early departure, smooth flight, early arrival. The entertainment package has very good recent movie options. The flight crew were friendly and professional.

My suitcase was destroyed. The top part where the handle is is completed broken. And unusable now.

Since when do I have to pay for my checked bag? I have a United Explorer mileage plus silver card and I was charged for my checked bags. This also is an international flight. So I would like an explanation to be clear before I choose an airline please?

Michael, our FA was very attentive, even finding me a chocolate brownie from economy class when the dessert selections were all dairy based. ( intolerant, not allergic so don’t usually need to order dairy free)

Our flight was 1.5 hours delayed. There was no weather for the inbound flight, so I don't understand why. This meant a VERY late arrival and only a quick nap before my morning flight.

It was very difficult to stretch my knee out and I am very short. I also had a torn tendon in my knee which made it extra uncomfortable anyways. My husband is 6'2" and I can't imagine him flying in that plane.

Delayed flight, so I switched fights to SFO to Phoenix , Phoenix to DSM. Excellent service through American Airlines

The AA app really sucks ... Every flight & connecting flights were delayed over 30 mins. One connecting flight on American Eagle said it was delayed in its arrival ... when it was actually parked across from the gate for over 1 hr before they pulled it to the gate. Seats in the economy/ main cabin are packed together like sardines ... no leg room.

The flight delay in Dallas created a domino effect that impacted all connecting flights, leading to an increase in the number of connections. As a result, I missed my flight from Casablanca to Marrakech due to the tight turnaround when landing in Casablanca. CMN Airport was understaffed; only one employee was available to assist passengers while others just stood by and watched. It was an extremely frustrating situation. Many passengers were crying and banging their hands on the counter while talking to customer service representative Allabough. Unfortunately, Allabough couldn’t change my flight in the system. At the same time, I was on the phone with an American Airlines customer service representative named Solomon, who said he couldn’t make the change either. So, I decided to take an ONYA Voyages train from Casablanca to Marrakech to reach my destination on Friday, June 26. It turned out to be an unpredictable trip.

Pretty bad gate mgmt upon arrival. No open gates and we had to wait at midnight. Shouldn’t be a surprise that an aircraft is coming in.

Comfortable plane ride however on delays disappointment no real details as to why the delays when other flights are leaving the airport

The chair cushions may need an upgrade. I have been noticing they are so worn out, thin so you’d sit in a dip 😄. Other than that, all was an enjoyable trip. Thanks AA!

I’m impressed that we were on time in Sacramento after having a late departure in Newark and our made it. The staff was friendly and warm.

5.5 hour delay with no explanation on why, along with no proactive effort to reaccomodate me.

EVERYTHING! It was so bad that I will be filing a claim for reimbursement for my seat as I could not fully sit in it due to an obese person being next to me and spilling over into my "space." And my personal item in the overhead been got crushed between two suitcases, so now my business laptop has been damaged beyond repair. Also, it was expensive! Since you pay for EVERYTHING, the cost of the trip was probably more than if you I used an airline that was not discounted. I will NEVER fly Spirit Airlines again!

One of worst experienc my family have every had with this airline. I was informed my Kayak that my flight was delayed and that my family will not make it to houston for our connecting flight. I contacted Spirit customer service to get my family on a later flight due to the delay in Vagas and them not making their connecting flight. The customer rep keep telling me that the flight from vagas is on time and not delayed. She even make to go to the spirit app on my phone and show me how to look up weather or not the flight was delayed. The app showed "on time" 20 minutes later when my family arrived at the airport for their flight, they were told that the flight was delayed and she will not make her connecting flight. I call spirit airline customer support again that night and spoke to another rep who apologize for his collegue and he told me that my family will receive a credit for this, this was on Saturday I still have not received the credit or an email letting me know when I will be credited for this inconvenience. This is not good business and it need to be fixed.

It was very bad it got delayed by 2 hours.Never going to travel with spirit airlines in future.

Flight delayed over 3 or 4 hours because no captain to fly plane. I couldn’t make a connection and had to wait 9 hours for another flight. Had to fly red eye flight. Sucks

I wanted to upgrade my seat because I’m 6’2 and never have enough leg room for my comfort. They upgraded my seat for free putting me in an emergency exit seat. I was very comfortable

We had an almost 7 hour flight delay. We left the gate twice and taxi-ed and then returned the gate twice. Finally we got a new flight crew (our third one) and then left the gate to the final time before departing at 6:45pm (original flight time was 12pm). Out of Newark.

First off, i received an e-mail to allow me to check in for our flight. I folllowed the link, when it came to the seat selection, I was unable to select any "free" seats ( meaning without any additional charge) because everything was " unavailable". My Husband and I were ttavelling with our 3 children hence, i wanted to be assured that we were all seated next to each other. I tried 3 times and everytime I click the selection it said " error loading". What the system wants is for me to buy the seats ( anywhere from $25 to $50 dollars each passenger) like I did on our flight bound to L.A. I called customer service and the guy was unhelpful all he kept repeating was to come really early at the airport and we will be assigned seats there. Imagine my anxiety!!! Spirit says they are a budget airline but they are actually the opposite!! And just before our flight, the flight attendant KEPT announcing/ selling the seats that were not purchased for a cheaper price!! Like it was a bidding/ bargaining game! This was our first and last time to fly Spirit.

My flight got cancelled by Spirit airlines, it was bad experience to me

Spirit gets you there; it's no worse than any other aircraft, all things considered. (It's not like everyone else is such a hero). But - holy moses - do they nickel and dime you to absolutely every nickel - I was really expecting to have to pay to use the bathroom. And when the captain comes on with a 5 minute sales pitch about getting "points", that was like something on Bizarro world. Other than that, everyone else was professional and worked hard to get us from point A to point B. I'm not loving all the "self-service" stuff but there it is - just when the machines don't work you don't have anyone to talk to.

Easy boarding and good flight. Need to work on the beverage and snack situation

Boarding in Orlando was not good. Giant mob at the gate, should have been lines.

Decent clean onboard experience. Okay discount airline experience. Unfortunately, any customer service interactions are difficult and unhelpful. There is no service. Also, a premium seat only gets you premium boarding if you line up first. Once they start general boarding you must go to the back of the line. Not very premium

baggage clamed had to wait over a hour and half for all people on my flight it was terrible

The ticketing agents were rude but then we had a great gate agent very nice we had to ride a buss out to where the plane was parked but it was in some back corner of the airport when we got to the plane the captain who was great btw was cleaning the plane because the same rude ticketing agent told them they we not contracted to vacuum the plane. The ride to las Vegas was fine We had a connecting flight to Dallas. The flight was fine but when we arrived in Dallas everyone who flew on any frontier airlines the picked up bags from baggage claim D15 had to wait over a hour for their bags to start we arrived at 11:30pm ish to the gate we didn't leave the baggage clamed till 12:50 am very not happy and i used to fly frontier 4 times a week for work in Denver i will not be using them again

I was 2 hr arrive in the airport and 45 min in the line . After take to my turn . The agent tell me I’m later . I can not board . So my vacation was going to the floor . Just for their bad customer service agent in the airline

Frontier Airlines was AWFUL. I was an hour early for my flight and the lady refused to check me in. I had to purchase a whole new ticket with a different airline.

My flight was canceled I was promised a reginf still not received.

Late, terrible communication, horrible planning of passenger seating until the literal last minute. One of the worst flying experiences of my life. Y'all suck

Both legs of the flight were changed. The day of the flight and length of the trip.

First of all, we never got on the connecting flight to Denver. They delayed our flight for two hours. If we would have gotten on that flight, we would have been stuck in Denver for 13 hours. So we re- routed our flight for a straight through flight to Oklahoma two days later. THEN, they delayed that flight for two hours. After that we were able to finally get on our flight and come home. Frontier Airlines - one of the worst airlines I have ever been on.

Everything you need to know for your flight to Houston

Cabin class types available on flights to Houston

Cabin classes available on flights to Houston. Prices are the lowest found on KAYAK over the last 7 days. Price and availability is not guaranteed.

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