$99 Find Cheap Flights from Puerto Rico to Houston

This is the cheapest one-way flight price found by a KAYAK user in the last 72 hours by searching for a flight to Houston departing on 2/3. Fares are subject to change and may not be available on all flights or dates of travel. Click the price to replicate the search for this deal.
1 adult
1 adult, Economy, 0 bags

KAYAK searches hundreds of travel sites at once for deals on flights to Houston

 
These are the airlines KAYAK users have selected most often from within our search results for flights to Houston
These are the airlines KAYAK users have selected most often from within our search results for flights to Houston
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Everything you should know

Cheapest round-trip
$166
Overall average: $226
Multiple Airlines
Tue 2/24Tue 3/3
SJU - IAH • 1 stop
Cheapest non-stop
$350
Typical prices: $215-$453
United Airlines
Tue 4/28Tue 4/28
SJU - IAH • Non-stop
Top airlines
United Airlines
Most flights • 17 per week
Southwest
Best reviews • 8.0 score
Airline reviews
Airline reviews
+1
+1
Airline reviews
Airline reviews
+1
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Flight Deals
Booking Insights
Flight Deals

Cheap Flights from Puerto Rico to Houston

 
Here are some of the best deals found on KAYAK recently from the most popular airlines for round-trip flights from Puerto Rico to Houston that are departing in the next months. While these flights were available on KAYAK in the last 72 hours, prices and availability are subject to change and deals may expire.
Discover the best prices for you by selecting your travel dates on KAYAK.

Recent round-trip flight deals from Puerto Rico to Houston

Tue, Feb 24 - Tue, Mar 3
Multiple Airlines Logo
11:52 am - 11:59 pm
SJU
-
IAH
14h 07m
1 stop
Multiple Airlines Logo
6:15 am - 3:06 pm
IAH
-
SJU
6h 51m
1 stop
$166Multiple Airlines
Tue, Feb 24 - Tue, Mar 3
Multiple Airlines Logo
11:52 am - 11:59 pm
SJU
-
IAH
14h 07m
1 stop
Multiple Airlines Logo
7:59 pm - 2:53 am
IAH
-
SJU
28h 54m
1 stop
$168Multiple Airlines
Wed, Apr 8 - Thu, Apr 23
Multiple Airlines Logo
11:07 am - 11:49 pm
SJU
-
IAH
13h 42m
1 stop
Multiple Airlines Logo
4:03 pm - 12:53 am
IAH
-
SJU
7h 50m
1 stop
$170Multiple Airlines
Sat, Feb 21 - Mon, Feb 23
Frontier Logo
5:31 pm - 1:46 pm
SJU
-
IAH
22h 15m
1 stop
Frontier Logo
8:18 pm - 12:43 am
IAH
-
SJU
26h 25m
1 stop
$178Frontier
Thu, Feb 19 - Mon, Feb 23
Frontier Logo
6:00 am - 1:06 pm
SJU
-
IAH
9h 06m
1 stop
Frontier Logo
8:18 pm - 9:54 am
IAH
-
SJU
11h 36m
1 stop
$182Frontier
Tue, Mar 3 - Wed, Mar 11
Spirit Airlines Logo
11:52 am - 11:59 pm
SJU
-
IAH
14h 07m
1 stop
Spirit Airlines Logo
9:16 am - 4:32 pm
IAH
-
SJU
6h 16m
1 stop
$183Spirit Airlines
Sat, Feb 7 - Sun, Feb 22
Spirit Airlines Logo
11:52 am - 10:56 pm
SJU
-
IAH
13h 04m
1 stop
Spirit Airlines Logo
4:20 pm - 10:17 am
IAH
-
SJU
15h 57m
1 stop
$184Spirit Airlines
Sat, Apr 25 - Mon, Apr 27
American Airlines Logo
11:59 pm - 9:26 am
SJU
-
HOU
10h 27m
1 stop
American Airlines Logo
8:21 pm - 4:32 am
HOU
-
SJU
7h 11m
1 stop
$406American Airlines
Wed, Apr 8 - Sat, Apr 11
United Airlines Logo
12:15 am - 4:58 pm
BQN
-
IAH
17h 43m
2 stops
United Airlines Logo
1:38 pm - 11:09 pm
IAH
-
BQN
8h 31m
1 stop
$715United Airlines
Mon, Mar 2 - Sat, Mar 7
United Airlines Logo
1:09 am - 1:14 pm
BQN
-
IAH
14h 05m
2 stops
United Airlines Logo
7:20 am - 10:57 pm
IAH
-
BQN
13h 37m
2 stops
$1,104United Airlines
Booking Insights

KAYAK's insights & trends for flights to Houston

Get data-powered insights and trends for flights to Houston to help you find the cheapest flights, the best time to fly and much more.

What is a good deal for flights to Houston?

If you’re looking for cheap airfare to Houston, 25% of our users found tickets to Houston for the following prices or less: From San Juan Luis Munoz Marin Intl Airport $332 one-way - $419 round-trip.

How far in advance should I book a flight to Houston?

To calculate weekly average prices, KAYAK takes all prices for each week before departure over the last year for round-trip flights to Houston, removes the top 0.1% to account for outliers, and then takes the average of all the values for each week.

To get a below average price, you should book around 0 weeks before departure. For the absolute cheapest price, our data suggests you should book 50 days before departure.

Which is the cheapest airport to fly into in Houston?

Prices will differ depending on the departure airport, but generally, the cheapest airport to fly to in Houston is Houston Hobby Airport, with an average flight price of $272.

Good to know

Cheapest flight$99
Flight from San Juan to Houston George Bush Airport

FAQs - booking Houston flights

  • Which Houston airport is closest to central Houston?

    There are 2 major airports in Houston. The nearest airport from Houston city center is Houston Hobby Airport (9 miles), followed by Houston George Bush Airport (16 miles).

  • How much is a flight to Houston?

    On average, a flight to Houston costs $451. The cheapest price found on KAYAK in the last 2 weeks cost $188 and departed from San Juan Luis Munoz Marin Intl Airport.

  • What is the cheapest day to fly to Houston?

    Based on KAYAK data, the cheapest day to fly to Houston is Thursday where tickets can be as cheap as $395. On the other hand, the most expensive day to fly is Sunday, where prices are $561 on average.

  • How does KAYAK find such low prices on flights to Houston?

    KAYAK is a travel search engine. That means we look across the web to find the best prices we can find for our users. With over 2 billion flight queries processed yearly, we are able to display a variety of prices and options on flights to Houston.

  • How does KAYAK's flight Price Forecast tool help me choose the right time to buy my flight ticket to Houston?

    KAYAK’s flight Price Forecast tool uses historical data to determine whether the price for a flight to Houston is likely to change within 7 days, so travelers know whether to wait or book now.

  • What is the Hacker Fare option on flights to Houston?

    Hacker Fares allow you to combine one-way tickets in order to save you money over a traditional round-trip ticket. You could then fly to Houston with an airline and back with another airline.

  • What is KAYAK's "flexible dates" feature and why should I care when looking for a flight to Houston?

    Sometimes travel dates aren't set in stone. If your preferred travel dates have some wiggle room, flexible dates will show you all the options when flying to Houston up to 3 days before/after your preferred dates. You can then pick the flights that suit you best.

  • What is the cheapest time of day to fly to Houston?

    The cheapest time of day to fly to Houston is generally at night, when flights cost $380 on average. The most expensive time of day to fly to Houston is generally in the afternoon, which is peak travel time and where the average cost of a ticket is $541.

Top tips for finding cheap flights to Houston

  • Enter your preferred departure airport and travel dates into the search form above to unlock the latest Houston flight deals.

Reviews of the top 5 airlines serving from Puerto Rico to Houston

 
See real verified KAYAK customer reviews for airlines flying to Houston. Airline scores are aggregated from all reviews left by passengers on KAYAK after flying with an airline from Puerto Rico to Houston. KAYAK doesn’t show reviews that are older than 5 years. Learn how KAYAK collects reviews.
Need help choosing which airline to fly with to Houston? KAYAK airline reviews give an overall score for each airline based on loads of factors, including comfort, boarding, in-flight entertainment and more, to make your decision easier. See airline scores according to verified KAYAK customer reviews.
8.0
SouthwestOverall score based on 4268 reviews
8.6Crew
7.0Food
8.1Boarding
8.0Comfort
7.5Entertainment
Airline reviews

Great flight but super high price. Glad it was a business trip and not personal

10.0 ExcellentPieter, Jan 2026
LGB - DAL
Read more Southwest reviews

Great flight but super high price. Glad it was a business trip and not personal

On time. Friendly staff. Took to long to pre bord all the specialty groups. Cramped small plane

Never went on board this flight. Kayak uses Underpricer (which is a scam business) as it's "customer service provider". This customer service is a classic bait and switch "service". I Got caught in the UnderPricer Bait and switch scam. 14 hours on the phone with people from India with heavy accents and upselling me to useless products. The original sell was a flight on spirit. Then they contact me later, an say after they have my money that the flight is no good as is is only one seat for a party of two. I am still in dispute to get my money back. Went to Spirit direct and had a beautiful vacation. I should never have used Kayak and their rip off artists UnderPricer.

No delays and arrived to destination 30 min early. Staff was super friendly.

Everything a cheap airline should be at normal airline rates.

Full cans of soda would be nice. A choice between two snacks would be appreciated.

Tried watching free movie and it kept freezing so I couldn’t finish.

I was re-booked onto another flight because my original flight was delayed and I would have missed my connector. I ended up in the “C” group after paying extra to be in the “A “ group on the original flight. At least if you’re going to re-book people, re-book them into the same group.

Was good. I miss the free 2 checked bags. That was part of what made Southwest special

Multiple delays and gate changes. Arrived at final destination 6 hours late. All rental cars had been taken.

Delayed, toilets did not flush, pilot parked to far away from Gate

Check-in, boarding and the flight from Phoenix to Houston was quick and easy. The flight from Houston to Shreveport was delayed 5 hours. It was frustrating but I think United handled it the best they could.

The staff was hospitable and professional. The seat had a bit of wear. The winner shade was stuck 1/4 open. I received the best of both worlds. The morning sun was able to come in and blind the screen i was trying to use while at the same time it was too low to look out and enjoy the view. Rather embarrassing for a 1st class ticket.

In Liberia airport 5 min before our departure the airport was closed for takeoff for 30 min. Upon arrival to IAH we didn’t have any available gate and waited taxing another 40 min. As a result we arrived for 1+ h later. The walkway to the passport control in IAH is about 1-2 ml long. After the passport control you have to pass the security check again. Only 3 out of 16 checkpoints were open and the line was enormously long. As a result, even though we supposed to have 2.5 hrs gap in between the flights we missed our transfer. United rebooked us for the next available flight early morning and provided free hotel and meal vouchers through.

United is an incompetent airline. They parked the plane on the tarmac for an hour after arriving because they “didn’t have a gate available” it was actually some sort of lie because as we de planed there were approximately 9 open and manned and empty gates that we walked past. Many people on the flight missed connections for the hour long sit on the tarmac. Utterly baffling and incompetent behavior from United flight ops.

I boarded flight UA#1318 at Sacramento International Airport going back to Houston TX. The flight was scheduled at 5:10am. I was able to check in virtually using the United Airlines app. When I entered the airport, there was no one outside assisting with checked bags as it was for Delta Airlines. Immediately upon entering, there was a LONG, EXTREMELY LONG line to the kiosks to get boarding passes. I stand in line to get boarding passes then had to move to ANOTHER EXTREMELY LONG line to get my bags checked in. While standing in this line, we noticed an agent taking customers to 3 at a time to her station to check their bags in. Lucky for me, she called me back, checked my bags for me and I was on my way. I then encountered another long line at the TSA check and to avoid I ending up having to sign up for CLEAR to bypass it. So glad, I did.,...Both of my flights were great with no issues, butthe check in progress at Bush Airport was so much smoother. Check-in at SMF airport needs to be anaylzed and corrected. Do better United, I know you can....thanks

everything was pretty good. Houston airport is awful. Unnecessarily inefficient; people working there are rude. Badly run

Staff on board was excellent. Positive upbeat helpful- like it used to be.

The Sears in the 800s are not too good perfect Airbus why cant the new 737 fix that

Ot was overall fine. Left on time and had basic snacks. Weather was finicky but that’s not the airlines fault.

2 hour delay due to equipment failure. No updates via the app and airport screens (which continued to show a departure time in the past). AA eventually switched planes and the new plane was not catered or cleaned correctly.

I booked an aisle seat and was given a middle. At 6'4" 230lbs, it is not ideal to fly in the middle row for myself and passengers.

The aircraft had several problems - from excess fuel to non operational ac. Two hours of delay in Chicago could have been avoided with proper planning and aircraft maintenance.

They made me pay $40 to check a bag that was listed as free when I bought my ticket. Then before boarding they offered to check any bags free.

The seats from lax to DFW was so tight that I could not move my legs . No WiFi and had to pay . Not a good selection of entertainment

The flight was good. We had to spend almost an hour on the tarmac when we arrived in Dallas. Waiting for a gate. What’s the point of arriving early if you have no gate to park at?

Lower WiFi prices; allow us to see our flight on a map; more variety of drink choices.

Kayak was among the missing. There was not the usual advice regarding next gate after arriving in Dallas. No communication after the reminder to check in before the Moline flight. What happened?

They should have allowed for extra time to de-ice the plane before boarding passengers. This delayed us about 10-15 mins after we boarded. Overall experience was fine. Crew was friendly and on top of everything. We didn’t have any issues during the flight.

Our flight from Eagle to Vail was delayed to the point we missed our connection to Savannah. Now we’re a family of 4 in a hotel room with luggage, no toiletries, no clean clothes. Gate attendant said the delay was mechanical but it was put in the system as something else so no compensation. That’s just wrong.

For the cost you can't e too critical, but the inablitiy to recline the seat and minimal cushioning in the seats made for a less than comfortable flight. Other than that we had an ealry departure and arrival, boarding was smooth.

Horrible experience. First and last time using this airline. Made an announcement that boarding will start in 15 minutes, canceled the flight 5 minutes later due to no airline staff. Had to book another flight on Delta since Spirit had no other flights arriving to my original destination the same day. I wouldn't recommend anyone to fly with Spirit. No wonder why it consistently ranks high among worst airlines.

The plane was supposed to leave at 12:59 Amma and another plane took us around 9:30 am. There were 7 delay announcements. We were to receive a voucher of $12 back to pay for food at any place in the airport. One passenger tried to use the voucher was denied. I did not receive the voucher for me, my son, and grandson. I went to the desk and informed them and they took my phone # and email and they told me to wait. I did and was never sent. The plane was uncomfortable, the crew was dismissive of anyone beyond the last two seats. I will NEVER fly or recommend Spirit Airlines again.

I knew what I was getting into, but never again. Hour long bag drop. 1.5 hour delay. 1 hr 45 mins sitting on the tarmac after landing. They lost a bunch of bags but luckily not mine. Awful experience.

Loved that all flights were om time or early. Hated all the additional costs for a seat and luggage.

Our flight got rescheduled 48 hours later, the airline didn’t pay a penny for our expenses.

My baby was crying uncontrollably for the longest time and the entire crew was SO supportive, I’m so appreciative of them. Thank you so much for the support during an exhausting moment. We got very lucky.

Uncomfortable seats and tiny tray table. Expensive snacks. Flight was on time and crew was pleasant but take me back to Southwest!

Boarding and unboarding processes were pretty smooth. I gave a low score for Boarding because of how my flight was missing from all the boards at the airport, and when I checked the flight status on the Spirit website, it said it would be departing from Terminal E, gate D15. There are no "D" gates in terminal E.

The flight was on time and the crew was very professional and accommodating. When other airlines are canceling flights Spirit is still flying with on time flights. I have no complaints and will continue to choose Spirit when it is the best option for me.

Very well recently! Frontier is improving and less harrassing customer on luggages! Positive!

Good for a budget airline! It was easy to get on, staff was really nice. Can’t say anything about the food or entertainment because it wasn’t available, which is fine.

I am writing to express my disappointment with my recent Frontier Airlines flight. I was charged $99 at the gate because my bag was said to be too large, yet once onboard there was no available overhead bin space, and I was required to place the bag under the seat in front of me anyway. This made the charge feel unnecessary and unfair. Additionally, before the flight even took off, I was asked to move from the seat I paid for into a middle seat so another passenger and her cat could have my seat to themselves. I was not offered compensation or an explanation for being moved from a paid seat. Between the unexpected bag fee and being forced to give up my seat, this experience fell well below acceptable customer service standards. I would appreciate a review of this situation and appropriate compensation.

It was costly and difficult to check in. $85 to take a small suitcase with me, carry on or checked and $75 on the return trip, Plus $25 if I didn't check my self in check in $25, because I couldn't do it on the kiosk. Small very uncomfortable seats, waited on the runway for near an hour each way. It was my worst flight to date.

It was ok. It was expensive to check 2 bags ($75.00 per bag), and then it took a long time to wait for shuttle to take us from one terminal to the terminal where the plane was taking off at LAX. And all of this for a flight where we had to pay for any food or drink that was not water.

It didn’t happen. I booked it and then was told it wasn’t available and then forced to pay far higher prices for a worse option

A 630departure flight Delayed 6hours! They changed my gate, I moved to the new gate. Had our flight on the screen for 12noon departure. I go get above to eat, check screen again and the flight was gone, no notice no announcement, nothing!! They sent my bag on the flight I wasn’t on, got it back to me 3days later. Thank goodness they did refund my money but I will NEVER fly them again.

Due to weather, my flight was delayed, further delayed, then canceled. I eventually got through to a support person who helped me find a different route out of MSP, but to get to DIA, they didn't want to, but eventually did help with the connection ticket purchase. But even this replacement flight was delayed time and time again, and I would have missed my connecting flights and I didn't want to get stuck in a layover city, so after 12 hours at the airport with two young boys who were very tired, we just cancelled our plans and spent the week at home, instead of Nana's.

Plane and crew on board were fine. Everything else was terrible.

The third party booking with cheapflightsfares was awful. Kayak should NOT partner with them. They sold me a bundle including seat selection and carry-on, but did not book the carry-ons with Frontier, so I’m out of pocket for $414 more while I await resolution.

Everything you need to know for your flight to Houston

Cabin class types available on flights to Houston

Cabin classes available on flights to Houston. Prices are the lowest found on KAYAK over the last 7 days. Price and availability is not guaranteed.