Hotels in Mission Bay, San Diego

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Recommended by KAYAK

Best hotels in Mission Bay (San Diego)

Most recommended Mission Bay hotels

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The Boardwalk Hotel - San Diego - Balcony
The Boardwalk Hotel
Mission Bay
8.8Very good(38)
Free Wi-Fi
$250+
Check availability
Paradise Point Resort & Spa - San Diego - Bedroom
Paradise Point Resort & Spa
Mission Bay
8.1Very good(1866)
Free Wi-Fi
Pool
Pet friendly
Spa
$237+
Check availability
Catamaran Resort Hotel and Spa - San Diego - Patio
Catamaran Resort Hotel and Spa
Mission Bay
8.2Very good(623)
Free Wi-Fi
Pool
Pet friendly
Spa
$281+
Check availability
San Diego Mission Bay Resort - San Diego - Restaurant
San Diego Mission Bay Resort
Mission Bay
7.8Good(405)
Free Wi-Fi
Pool
Pet friendly
Spa
$258+
Check availability
Bahia Resort Hotel - San Diego - Restaurant
Bahia Resort Hotel
Mission Bay
8.2Very good(1459)
Parking
Free Wi-Fi
Pool
Pet friendly
$231+
Check availability
The Dana on Mission Bay - San Diego - Building
The Dana on Mission Bay
Mission Bay
8.2Very good(1624)
Pool
Pet friendly
$197+
Check availability
Hyatt Regency Mission Bay Spa And Marina - San Diego - Balcony
Hyatt Regency Mission Bay Spa And Marina
Mission Bay
7.8Good(2563)
Free Wi-Fi
Pool
Pet friendly
Spa
$261+
Check availability
The Wayfarer San Diego - San Diego - Beach
The Wayfarer San Diego
Mission Bay
8.6Very good(1640)
Free Wi-Fi
Pool
$243+
Check availability
Ith Mission Beach Backpacker Hostel - San Diego - Bedroom
Ith Mission Beach Backpacker Hostel
Mission Bay
8.6Very good(172)
Free Wi-Fi
$42+
Check availability
Beach House Steps To Sand Huge Patio Free Parking - San Diego - Kitchen
Beach House Steps To Sand Huge Patio Free Parking
Mission Bay
Free Wi-Fi
$345+
Check availability
2 Level Townhouse + Sky Deck + Steps to Ocean - San Diego - Outdoors view
2 Level Townhouse + Sky Deck + Steps to Ocean
Mission Bay
9.3Wonderful(29)
Free Wi-Fi
$299+
Check availability
Newer Unit! -- Ocean Front with Amazing Ocean Views! - San Diego - Kitchen
Newer Unit! -- Ocean Front with Amazing Ocean Views!
Mission Bay
Free Wi-Fi
$293+
Check availability
Belmont Shores - San Diego - Living room
Belmont Shores
Mission Bay
Parking
Free Wi-Fi
$556+
Check availability
B5089 Seascape Beach House - San Diego - Outdoors view
B5089 Seascape Beach House
Mission Bay
9.7Wonderful(43)
Parking
Free Wi-Fi
$636+
Check availability
Steps To The Bay And The Ocean!! - San Diego - Living room
Steps To The Bay And The Ocean!!
Mission Bay
Free Wi-Fi
$218+
Check availability
Reduced Rates- Book Now!! Belmont Beach House - Mission Beach - San Diego - Balcony
Reduced Rates- Book Now!! Belmont Beach House - Mission Beach
Mission Bay
Pet friendly
$997+
Check availability
Modern Beach Studio Condo - San Diego - Beach
Modern Beach Studio Condo
Mission Bay
Free Wi-Fi
$173+
Check availability
Ocean Front Patio, Seconds to Beach/Ocean, Parking - San Diego - Patio
Ocean Front Patio, Seconds to Beach/Ocean, Parking
Mission Bay
$355+
Check availability
Oceanfront Beauty w/ Expansive Views & Private Hot Tub - San Diego
Oceanfront Beauty w/ Expansive Views & Private Hot Tub
Mission Bay
Spa
$1,812+
Check availability
Bright Dog-Friendly Condo W/ Access To Everything Mission Beach Has To Offer! - San Diego
Bright Dog-Friendly Condo W/ Access To Everything Mission Beach Has To Offer!
Mission Bay
$258+
Check availability
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KAYAK’s insights for hotels in Mission Bay

Discover seasonal trends, ideal booking windows, and other data-driven tips to plan your stay in Mission Bay with confidence.

Which month has the cheapest hotel rates in Mission Bay?

Hotels are cheapest in Mission Bay in January, with average rates of $212. In comparison, July is the most expensive month, with prices at $477.

What is the cheapest day of the week to book a hotel in Mission Bay?

Sunday offers the lowest rates in Mission Bay, with an average nightly price of $253. The highest prices are found on Friday, with average rates at $310.

How much is a hotel in Mission Bay for tonight?

The best deal for a 3-star hotel room in Mission Bay found by KAYAK users in the last 3 days was $140, while a 4-star hotel the lowest price was $174. The cheapest room found overall was for $140.

How much is a hotel in Mission Bay for this weekend?

The cheapest hotel room in Mission Bay for the upcoming weekend found on KAYAK in the last 3 days was for $266 per night. For the same dates, 3-star hotel rooms have been found for as low as $266 per night and 4-star hotel rooms from $285 per night.
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How much is a Mission Bay hotel?

Here are our most popular & best value hotels

Good to know

Low season

January

High season

July

Average price (weeknight)

$273

Average price (weekend night)

$303
Cheapest month to stay with an average 29% drop in price.
Most expensive month to stay with an average 60% rise in price.
Average Sun - Thu price over the last 2 weeks.
Average Fri & Sat price over the last 2 weeks.

Top tips for finding a hotel deal in Mission Bay

  • One of the most upscale hotel choices in the Mission Bay area is the Paradise Point Resort & Spa, which is an island resort in a beautiful waterfront location. Some of the wonderful amenities you will find at this hotel include an outdoor pool, bicycle rental, tennis courts, and a basketball court.
  • Travelers looking for a hotel with a beachfront location should consider The Wayfarer San Diego, which not only puts you right at the edge of the surf but also has a great outdoor pool and a restaurant.
  • Familes looking for a good hotel choice in Mission Bay might consider the Bahia Resort Hotel, that not only offers a wonderful outdoor pool but also has a private beach and a great restaurant.
  • When you are traveling to Mission Bay for business, a great hotel choice is the Wyndham Garden San Diego near SeaWorld, which offers the convenience of an airport shuttle, a business center, and room service.
  • Travelers looking for one of the trendiest hotels in Mission Bay should consider the Tower23 Hotel, which sits right on the water's edge and combines minimalist design with sleek sophistication.
  • If you’re looking for a cheap hotel in Mission Bay, you should consider going during the low season. You’ll generally find lower-priced hotels in Mission Bay in January and December.
  • If you’re looking for a bargain then KAYAK data shows that you’ll find the best hotel deals in Mission Bay (San Diego) if you stay on a Sunday. On the other hand, the most expensive day for hotel bookings is Friday.
  • If you’re looking for a last minute bargain, the cheapest 3-star hotel in Mission Bay (San Diego) found on KAYAK in the last 2 weeks was $148, while the most expensive was $532.
  • Not sure just how much there is to see and do in Mission Bay? KAYAK users usually book their hotel here for 2 days.

FAQs when booking a hotel in Mission Bay

  • What are the best hotels in Mission Bay?

    Mission Bay is a great part of San Diego to make your base. If you’re staying in Mission Bay area then Paradise Point Resort & Spa, Hyatt Regency Mission Bay Spa And Marina, and Bahia Resort Hotel are all recommended on KAYAK.

  • Which hotels in Mission Bay are romantic?

    If you’re looking for a romantic break with your partner in Mission Bay, then why not stay at The Wayfarer San Diego, Paradise Point Resort & Spa, or Bahia Resort Hotel, which have been recommended by KAYAK users as great for couples.

Where to stay in Mission Bay?

Our map will help you find the perfect hotel in Mission Bay, San Diego by showing you the exact location of each hotel.

What Mission Bay hotel guests are talking about

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Hotels about topic

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Bahia Resort Hotel - San Diego - Restaurant
Bahia Resort Hotel
Mission Bay
8.2Very good(1459)
Parking
Free Wi-Fi
Pool
Pet friendly
$231+
Check availability
The Dana on Mission Bay - San Diego - Building
The Dana on Mission Bay
Mission Bay
8.2Very good(1624)
Pool
Pet friendly
$197+
Check availability
The Wayfarer San Diego - San Diego - Beach
The Wayfarer San Diego
Mission Bay
8.6Very good(1640)
Free Wi-Fi
Pool
$243+
Check availability
Hyatt Regency Mission Bay Spa And Marina - San Diego - Balcony
Hyatt Regency Mission Bay Spa And Marina
Mission Bay
7.8Good(2563)
Free Wi-Fi
Pool
Pet friendly
Spa
$261+
Check availability
Catamaran Resort Hotel and Spa - San Diego - Patio
Catamaran Resort Hotel and Spa
Mission Bay
8.2Very good(623)
Free Wi-Fi
Pool
Pet friendly
Spa
$281+
Check availability
San Diego Mission Bay Resort - San Diego - Restaurant
San Diego Mission Bay Resort
Mission Bay
7.8Good(405)
Free Wi-Fi
Pool
Pet friendly
Spa
$258+
Check availability

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Everything you need to know for your stay in San Diego

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