San Diego hotels in Mission Bay

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Best hotels in Mission Bay (San Diego)

Most recommended Mission Bay hotels

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How much is a Mission Bay hotel?

Here are our most popular & best value hotels

3 stars

4 stars and above

Good to know

Low season


High season


Average price (weeknight)


Average price (weekend night)

Cheapest month to stay with an average 23% drop in price.
Most expensive month to stay with an average 80% rise in price.
Average Sun - Thu price over the last 2 weeks.
Average Fri & Sat price over the last 2 weeks.

When to book a hotel in Mission Bay

Price per night / 3-star hotel. Prices are not fixed and may vary with time.
Average nightly price per month
Average nightly price

Top tips for finding a hotel deal in Mission Bay

  • If you’re looking for a cheap hotel in Mission Bay, you should consider going during the low season. You’ll generally find lower-priced hotels in Mission Bay in October and December.
  • If you’re looking for a bargain then KAYAK data shows that you’ll find the best hotel deals in Mission Bay (San Diego) if you stay on a Sunday. On the other hand, the most expensive day for hotel bookings is Tuesday.
  • For the lowest prices, try to book your Mission Bay hotel at least 6 days before your stay.
  • If you’re looking for a last minute bargain, the cheapest 3-star hotel in Mission Bay (San Diego) found on KAYAK in the last 2 weeks was $169, while the most expensive was $663.
  • Not sure just how much there is to see and do in Mission Bay? KAYAK users usually book their hotel here for 5 days.

FAQs when booking a hotel in Mission Bay

Where to stay in Mission Bay?

Our map will help you find the perfect hotel in Mission Bay, San Diego by showing you the exact location of each hotel.