JNU

$344 Find Cheap Flights from San Francisco Bay Area to Juneau - Compare and Save

This is the cheapest one-way flight price found by a KAYAK user in the last 72 hours by searching for a flight to Juneau departing on 7/29. Fares are subject to change and may not be available on all flights or dates of travel. Click the price to replicate the search for this deal.
1 adult
1 adult, Economy, 0 bags

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Flight Deals

Cheap Flights from San Francisco Bay Area to Juneau

 
Here are some of the best deals found on KAYAK recently from the most popular airlines for round-trip flights from San Francisco Bay Area to Juneau that are departing in the next months. While these flights were available on KAYAK in the last 72 hours, prices and availability are subject to change and deals may expire.
Discover the best prices for you by selecting your travel dates on KAYAK.

Recent round-trip flight deals from San Francisco Bay Area to Juneau

Wed, Oct 7 - Fri, Oct 9
Alaska Airlines Logo
7:00 am - 9:19 pm
OAK
-
JNU
39h 19m
2 stops
Alaska Airlines Logo
7:10 am - 11:26 am
JNU
-
OAK
27h 16m
1 stop
$504Alaska Airlines
Wed, Oct 7 - Fri, Oct 9
Alaska Airlines Logo
7:51 pm - 8:53 am
OAK
-
JNU
14h 02m
2 stops
Alaska Airlines Logo
7:10 am - 10:55 pm
JNU
-
OAK
14h 45m
1 stop
$508Alaska Airlines
Wed, Oct 7 - Fri, Oct 9
Alaska Airlines Logo
7:55 am - 8:53 am
SJC
-
JNU
25h 58m
2 stops
Alaska Airlines Logo
7:10 am - 9:41 am
JNU
-
SJC
25h 31m
1 stop
$509Alaska Airlines
Wed, Oct 7 - Fri, Oct 9
Alaska Airlines Logo
6:50 pm - 9:19 pm
OAK
-
JNU
27h 29m
2 stops
Alaska Airlines Logo
2:07 pm - 9:43 am
JNU
-
OAK
18h 36m
2 stops
$513Alaska Airlines
Wed, Oct 7 - Fri, Oct 9
Alaska Airlines Logo
9:23 pm - 9:19 pm
SFO
-
JNU
24h 56m
2 stops
Alaska Airlines Logo
6:30 pm - 9:39 am
JNU
-
SFO
14h 09m
1 stop
$518Alaska Airlines
Wed, Oct 7 - Fri, Oct 9
Alaska Airlines Logo
9:23 pm - 9:19 pm
SFO
-
JNU
24h 56m
2 stops
Alaska Airlines Logo
6:30 pm - 12:48 pm
JNU
-
SFO
17h 18m
2 stops
$523Alaska Airlines
Fri, Aug 28 - Wed, Sep 2
Alaska Airlines Logo
6:22 pm - 4:19 pm
SFO
-
JNU
22h 57m
1 stop
Alaska Airlines Logo
9:00 pm - 5:23 pm
JNU
-
SFO
19h 23m
1 stop
$582Alaska Airlines
Thu, Sep 10 - Sat, Sep 19
Delta Logo
10:35 am - 6:16 pm
SFO
-
JNU
8h 41m
1 stop
Delta Logo
7:20 am - 4:57 pm
JNU
-
SFO
8h 37m
1 stop
$586Delta
Sun, Sep 13 - Fri, Sep 18
Delta Logo
10:31 am - 6:07 pm
SFO
-
JNU
8h 36m
1 stop
Delta Logo
7:20 am - 9:36 am
JNU
-
SFO
25h 16m
1 stop
$588Delta
Fri, Aug 28 - Wed, Sep 2
Alaska Airlines Logo
6:22 pm - 5:56 pm
SFO
-
JNU
24h 34m
3 stops
Alaska Airlines Logo
9:00 pm - 5:23 pm
JNU
-
SFO
19h 23m
1 stop
$597Alaska Airlines
Useful Info

Good to know

Low seasonNovember
Cheapest flight$344
Best time to beat the crowds with an average 4% drop in price.
Most popular time to fly and prices are also 3% lower on average.
Flight from San Francisco to Juneau

FAQs for booking flights from San Francisco Bay Area to Juneau

  • How does KAYAK find such low prices on flights from San Francisco Bay Area to Juneau?

    KAYAK is a travel search engine. That means we look across the web to find the best prices we can find for our users. With over 2 billion flight queries processed yearly, we are able to display a variety of prices and options on flights from San Francisco Bay Area to Juneau.

  • How does KAYAK's flight Price Forecast tool help me choose the right time to buy my flight ticket from San Francisco Bay Area to Juneau?

    KAYAK’s flight Price Forecast tool uses historical data to determine whether the price for a flight to Juneau from San Francisco Bay Area is likely to change within 7 days, so travelers know whether to wait or book now.

  • What is the Hacker Fare option on flights from San Francisco Bay Area to Juneau?

    Hacker Fares allow you to combine one-way tickets in order to save you money over a traditional round-trip ticket. You could then fly to Juneau with an airline and back to San Francisco Bay Area with another airline.

  • What is KAYAK's "flexible dates" feature and why should I care when looking for a flight from San Francisco Bay Area to Juneau?

    Sometimes travel dates aren't set in stone. If your preferred travel dates have some wiggle room, flexible dates will show you all the options when flying to Juneau from San Francisco Bay Area up to 3 days before/after your preferred dates. You can then pick the flights that suit you best.

Reviews of the top airline flying from San Francisco Bay Area to Juneau

 
Need help choosing which airline to fly with from San Francisco Bay Area to Juneau? KAYAK airline reviews give an overall score for each airline based on loads of factors, including comfort, boarding, in-flight entertainment and more, to make your decision easier. See airline scores according to verified KAYAK customer reviews.
7.9
Alaska AirlinesOverall score based on 12541 reviews
8.1Boarding
7.0Entertainment
7.8Comfort
8.5Crew
7.1Food
Airline reviews

Subject: Formal Complaint – Incompetent Service and Denied Boarding on Flight 1409 (CLSVJM – Dear Alaska Airlines Customer Relations, I am writing to file a formal complaint regarding my experience on Flight 1409 departing from Seattle on 6/13/26. As a physician and business owner who frequently coordinates group travel, this was one of the worst airline experiences I have encountered. Upon arrival, I was informed that my check-in boarding pass was not official, despite successfully obtaining it electronically through your website/app with no warnings or indications of issues. My electronic boarding pass was rejected, leading to cancellation/denial of boarding. The gate agent (an older woman) was unhelpful, claimed my name had been announced multiple times (which it had not—she did not even know my name correctly), and mistakenly boarded my traveling companion under my name. Additionally, an older blonde staff member nearly failed to return my passport, highlighting a clear lack of training on your check-in and boarding systems. This chaos forced me onto a later flight while my group waited in Canada, unable to check into our Airbnb or pick up rental cars (as I was the primary booker). The entire incident caused significant business disruption, stress, and additional expenses. I have flown Alaska Airlines previously but will not consider it again without resolution. I request: • Full reimbursement of any additional costs incurred. • Appropriate compensation (vouchers/miles) for the inconvenience and poor service. • Confirmation of corrective actions for Please respond within 7-10 business days. Sincerely, Dr. Chunwen Teng

2.0 MediocreJane, Jun 2026
SMF - SEA
Read more Alaska Airlines reviews

Subject: Formal Complaint – Incompetent Service and Denied Boarding on Flight 1409 (CLSVJM – Dear Alaska Airlines Customer Relations, I am writing to file a formal complaint regarding my experience on Flight 1409 departing from Seattle on 6/13/26. As a physician and business owner who frequently coordinates group travel, this was one of the worst airline experiences I have encountered. Upon arrival, I was informed that my check-in boarding pass was not official, despite successfully obtaining it electronically through your website/app with no warnings or indications of issues. My electronic boarding pass was rejected, leading to cancellation/denial of boarding. The gate agent (an older woman) was unhelpful, claimed my name had been announced multiple times (which it had not—she did not even know my name correctly), and mistakenly boarded my traveling companion under my name. Additionally, an older blonde staff member nearly failed to return my passport, highlighting a clear lack of training on your check-in and boarding systems. This chaos forced me onto a later flight while my group waited in Canada, unable to check into our Airbnb or pick up rental cars (as I was the primary booker). The entire incident caused significant business disruption, stress, and additional expenses. I have flown Alaska Airlines previously but will not consider it again without resolution. I request: • Full reimbursement of any additional costs incurred. • Appropriate compensation (vouchers/miles) for the inconvenience and poor service. • Confirmation of corrective actions for Please respond within 7-10 business days. Sincerely, Dr. Chunwen Teng

Never had so many staff members be rude and disrespectful. I had a staff member sarcastically call me “girly” after making me wait 20 minutes to be seen by her. I was able to print my luggage tag and she told me I was too late to check luggage I said the system obviously disagrees. And you had me wait way too long while you asked every single passenger ahead of me about their Disney vacations. She wasted so much time to then say “girly your bag won’t make it on the plane” I’m not her girly I’m a full grown adult. She needs to learn a hell of a lot of respect

My flight was several times rescheduled and then finally canceled.

The flight itself was great. But we had to wait over an hour to deplane so I missed my train. Not the crews fault. They were wonderful!

Flying into PAE was so easy because it’s baggage claim is quick and accesible. I had a car rental and the counter is inside the baggage claim area, very convenient.

It was a very short flight so there really wasn’t any entertainment my. The little pretzels were good though and the cabin crew was awesome.

The first flight was fine, great crew, but the plane was delayed 45 minutes to go to Seattle because of they were missing a ramp. That would make sense if the plane was actually at the gate. Not if we’re still waiting for a plane. After we landed we waited 30-45 minutes on the tarmac just to get off the plane. Alaska made me miss my connecting flight, wasting my time, and my money. I should honestly be reimbursed, but hey, when does the airline ever actually take accountability? Never.

Over all it was great. My original flight was canceled but they quickly rebooked me. I was frustrated because I had to cancel my entire plans for the day but all considered, not bad. The crew tried to keep us calm while we sat in the plane for was felt was an hour or so but they could use a bit of a script. The seats were comfortable and I would give it another try.

Flight delayed Didn’t send second leg of trip itemerary First class was fair, but not great.

Short trip, was nice to have a drink on the short flight still.

Everything you need to know for your flight to Juneau

Information on the airport you'll fly into in Juneau